HHsearch alignment for GI: 254780233 and conserved domain: cd04104
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=98.20 E-value=1.5e-05 Score=55.73 Aligned_cols=165 Identities=18% Similarity=0.245 Sum_probs=87.8
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCEECCCCHHHHHCCCEEE-EEEEEEEECC-EEEEEECCCCC--CCCH
Q ss_conf 499985468987788999999839614232200000388577987096064-6799999899-79999728987--5407
Q gi|254780233|r 21 NIAIIAHVDHGKTTLVDELLKQSGVFRDNQRVSERVMDCNDLEKERGITIL-AKVTSIVWND-VRINIVDTPGH--ADFG 96 (624)
Q Consensus 21 NiaIiaHvDhGKTTL~d~LL~~sG~~~~~~~v~~~vmD~~~~EreRGITI~-a~~~~~~~~~-~~iNiiDTPGH--~DF~ 96 (624)
T Consensus 3 ~iaVtGesGaGKSSfINAlR---Gl~~~d~~aA----~t-------Gv~eTT~~~~~Y~~p~~pnv~lwDlPG~Gt~~f~ 68 (197)
T cd04104 3 NIAVTGESGAGKSSFINALR---GVGHEEEGAA----PT-------GVVETTMKRTPYPHPKFPNVTLWDLPGIGSTAFP 68 (197)
T ss_pred EEEEECCCCCCHHHHHHHHH---CCCCCCCCCC----CC-------CCCCCCCCCEECCCCCCCCCEEECCCCCCCCCCC
T ss_conf 79995589986899999986---8898877758----88-------8874677862047999998769728999987659
Q ss_pred HHHH---HHHHHHCEEEEEEECCCCCCHHHH-HHHHHHHHCCCCEEEEEECCCCCCC----------CHHHHHHHHHHHH
Q ss_conf 9999---998742178999976878864789-9999999729978999975436674----------0256899999888
Q gi|254780233|r 97 GEVE---RILCMVESVVVLVDAAEGPMPQTK-FVVGKALKIGLRPIVVVNKVDRSDA----------RADEVINEVFDLF 162 (624)
Q Consensus 97 gEVe---r~l~~~DgaiLvVdA~eGv~~QT~-~vl~~A~~~~l~~IvvINKiDr~~a----------~~~~v~~ei~dlf 162 (624)
T Consensus 69 ~~~Yl~~~~~~~yD~fiiiss--~-rf~~nd~~la~~i~~~gK~fyfVRsK~D~dl~n~~~~~p~~f~~e~~L~~IR~~c 145 (197)
T cd04104 69 PDDYLEEMKFSEYDFFIIISS--T-RFSSNDVKLAKAIQCMGKKFYFVRTKVDRDLSNEQRSKPRSFNREQVLQEIRDNC 145 (197)
T ss_pred HHHHHHHCCCCCCCEEEEEEC--C-CCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCHHHHCCCCCCCHHHHHHHHHHHH
T ss_conf 899998658554578999838--8-6414269999999980992899986121400056637876659999999999999
Q ss_pred HHCCCCHHHCCH-HHHHHHHHCCEECCCCCCCCCCCCHHHHHHHHCCCCCC
Q ss_conf 622673011042-66887886591646742233486413555321024542
Q gi|254780233|r 163 SALDATDAQLDF-PILYGSGRFGWMSDSSDGSRDQGMVPLLNLIVDHVPPP 212 (624)
Q Consensus 163 ~~l~a~de~ld~-Pv~~~Sa~~G~~~~~~~~~~~~gl~~Lld~Ii~~iP~P 212 (624)
T Consensus 146 ~~~-L~~~gv~~p~VFLvS~~~---------~~~yDFp~L~~tl~~~Lp~~ 186 (197)
T cd04104 146 LEN-LQEAGVSEPPVFLVSNFD---------PSDYDFPKLRETLLKDLPAH 186 (197)
T ss_pred HHH-HHHCCCCCCCEEEEECCC---------CCCCCHHHHHHHHHHHHHHH
T ss_conf 999-998699999989993798---------22077689999999980898