HHsearch alignment for GI: 254780233 and conserved domain: cd04118

>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=98.90  E-value=2.6e-08  Score=73.75  Aligned_cols=150  Identities=19%  Similarity=0.210  Sum_probs=94.6

Q ss_pred             EEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCEECCCCHHHHHCCCEEEEE--EEEEEECC--EEEEEECCCCCCCCHH
Q ss_conf             9998546898778899999983961423220000038857798709606467--99999899--7999972898754079
Q gi|254780233|r   22 IAIIAHVDHGKTTLVDELLKQSGVFRDNQRVSERVMDCNDLEKERGITILAK--VTSIVWND--VRINIVDTPGHADFGG   97 (624)
Q Consensus        22 iaIiaHvDhGKTTL~d~LL~~sG~~~~~~~v~~~vmD~~~~EreRGITI~a~--~~~~~~~~--~~iNiiDTPGH~DF~g   97 (624)
T Consensus         3 ivlvGd~~VGKTsLi~r~~~--~~f~~~~---------------y~~tig~~~~~k~i~v~~~~v~l~iwDtaG~e~~~~   65 (193)
T cd04118           3 VVMLGKESVGKTSLVERYVH--HRFLVGP---------------YQNTIGAAFVAKRMVVGERVVTLGIWDTAGSERYEA   65 (193)
T ss_pred             EEEECCCCCCHHHHHHHHHH--CCCCCCC---------------CCCCCEEEEEEEEEEECCEEEEEEEEECCCCHHHHH
T ss_conf             99999699879999999985--9799899---------------787630588999999999999999991999731235


Q ss_pred             HHHHHHHHHCEEEEEEECCCCCCHHHH---HHHHHHH---HCCCCEEEEEECCCCCCC--CHHHH-HHHHHHHHHHCCCC
Q ss_conf             999998742178999976878864789---9999999---729978999975436674--02568-99999888622673
Q gi|254780233|r   98 EVERILCMVESVVVLVDAAEGPMPQTK---FVVGKAL---KIGLRPIVVVNKVDRSDA--RADEV-INEVFDLFSALDAT  168 (624)
Q Consensus        98 EVer~l~~~DgaiLvVdA~eGv~~QT~---~vl~~A~---~~~l~~IvvINKiDr~~a--~~~~v-~~ei~dlf~~l~a~  168 (624)
T Consensus        66 l~~~y~~~a~~~ilvydit~~---~Sf~~i~~W~~~i~~~~~~~~iilVGnK~DL~~~~~~~r~V~~~e~~~~a~~~~--  140 (193)
T cd04118          66 MSRIYYRGAKAAIVCYDLTDS---SSFERAKFWVKELQNLEEHCKIYLCGTKSDLIEQDRSLRQVDFHDVQDFADEIK--  140 (193)
T ss_pred             HHHHHHCCCCEEEEEECCCCH---HHHHHHHHHHHHHHHHCCCCCEEEEEECHHHHHCCCCCCCCCHHHHHHHHHHCC--
T ss_conf             579883477445788306987---999989999999997489999799977466322016664468999999999809--


Q ss_pred             HHHCCHHHHHHHHHCCEECCCCCCCCCCCCHHHHHHHHCCC
Q ss_conf             01104266887886591646742233486413555321024
Q gi|254780233|r  169 DAQLDFPILYGSGRFGWMSDSSDGSRDQGMVPLLNLIVDHV  209 (624)
Q Consensus       169 de~ld~Pv~~~Sa~~G~~~~~~~~~~~~gl~~Lld~Ii~~i  209 (624)
T Consensus       141 -----~~~~E~SAktg-----------~nV~e~F~~la~~i  165 (193)
T cd04118         141 -----AQHFETSSKTG-----------QNVDELFQKVAEDF  165 (193)
T ss_pred             -----CEEEEECCCCC-----------CCHHHHHHHHHHHH
T ss_conf             -----96999838989-----------39899999999999