HHsearch alignment for GI: 254780233 and conserved domain: cd04120
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=99.09 E-value=1.6e-09 Score=81.75 Aligned_cols=156 Identities=16% Similarity=0.188 Sum_probs=98.9
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCEECCCCHHHHHCCCEEEEEEEEEEECCEEEEEECCCCCCCCHHHHHH
Q ss_conf 99985468987788999999839614232200000388577987096064679999989979999728987540799999
Q gi|254780233|r 22 IAIIAHVDHGKTTLVDELLKQSGVFRDNQRVSERVMDCNDLEKERGITILAKVTSIVWNDVRINIVDTPGHADFGGEVER 101 (624)
Q Consensus 22 iaIiaHvDhGKTTL~d~LL~~sG~~~~~~~v~~~vmD~~~~EreRGITI~a~~~~~~~~~~~iNiiDTPGH~DF~gEVer 101 (624)
T Consensus 3 IvllGd~gVGKTsLi~rf~--~~~F~~~y~~--T----------ig~d~~~k~i~~~~~~v~l~IWDTaGqe~f~sl~~~ 68 (202)
T cd04120 3 VIIIGSRGVGKTSLMRRFT--DDTFCEACKS--G----------VGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSA 68 (202)
T ss_pred EEEECCCCCCHHHHHHHHH--CCCCCCCCCC--C----------CCEEEEEEEEEECCEEEEEEEEECCCCCCCCCCHHH
T ss_conf 9999979972999999995--4999998799--7----------646889999999999999999979886124523578
Q ss_pred HHHHHCEEEEEEECCCCCCHHHHHHHHHHHH----CCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCHHHCCHHHH
Q ss_conf 9874217899997687886478999999997----299789999754366740256899999888622673011042668
Q gi|254780233|r 102 ILCMVESVVVLVDAAEGPMPQTKFVVGKALK----IGLRPIVVVNKVDRSDARADEVINEVFDLFSALDATDAQLDFPIL 177 (624)
Q Consensus 102 ~l~~~DgaiLvVdA~eGv~~QT~~vl~~A~~----~~l~~IvvINKiDr~~a~~~~v~~ei~dlf~~l~a~de~ld~Pv~ 177 (624)
T Consensus 69 yyr~a~~~ilVyDit~~~SF~~l~~W~~~i~~~~~~~~~iiLVGNK~DL~~~R~V-s~~e~~~~A~~~~------~~~f~ 141 (202)
T cd04120 69 YYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDREI-SRQQGEKFAQQIT------GMRFC 141 (202)
T ss_pred HHHHHCEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCHHHCCC-CHHHHHHHHHHCC------CCEEE
T ss_conf 8764144589985688899999999999999746688718987653650531787-9999999998279------98899
Q ss_pred HHHHHCCEECCCCCCCCCCCCHHHHHHHHCCC
Q ss_conf 87886591646742233486413555321024
Q gi|254780233|r 178 YGSGRFGWMSDSSDGSRDQGMVPLLNLIVDHV 209 (624)
Q Consensus 178 ~~Sa~~G~~~~~~~~~~~~gl~~Lld~Ii~~i 209 (624)
T Consensus 142 EtSAkt~-----------~nV~e~F~~l~~~i 162 (202)
T cd04120 142 EASAKDN-----------FNVDEIFLKLVDDI 162 (202)
T ss_pred ECCCCCC-----------CCHHHHHHHHHHHH
T ss_conf 9258999-----------69899999999999