HHsearch alignment for GI: 254780233 and conserved domain: cd04120

>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=99.09  E-value=1.6e-09  Score=81.75  Aligned_cols=156  Identities=16%  Similarity=0.188  Sum_probs=98.9

Q ss_pred             EEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCEECCCCHHHHHCCCEEEEEEEEEEECCEEEEEECCCCCCCCHHHHHH
Q ss_conf             99985468987788999999839614232200000388577987096064679999989979999728987540799999
Q gi|254780233|r   22 IAIIAHVDHGKTTLVDELLKQSGVFRDNQRVSERVMDCNDLEKERGITILAKVTSIVWNDVRINIVDTPGHADFGGEVER  101 (624)
Q Consensus        22 iaIiaHvDhGKTTL~d~LL~~sG~~~~~~~v~~~vmD~~~~EreRGITI~a~~~~~~~~~~~iNiiDTPGH~DF~gEVer  101 (624)
T Consensus         3 IvllGd~gVGKTsLi~rf~--~~~F~~~y~~--T----------ig~d~~~k~i~~~~~~v~l~IWDTaGqe~f~sl~~~   68 (202)
T cd04120           3 VIIIGSRGVGKTSLMRRFT--DDTFCEACKS--G----------VGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSA   68 (202)
T ss_pred             EEEECCCCCCHHHHHHHHH--CCCCCCCCCC--C----------CCEEEEEEEEEECCEEEEEEEEECCCCCCCCCCHHH
T ss_conf             9999979972999999995--4999998799--7----------646889999999999999999979886124523578


Q ss_pred             HHHHHCEEEEEEECCCCCCHHHHHHHHHHHH----CCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCHHHCCHHHH
Q ss_conf             9874217899997687886478999999997----299789999754366740256899999888622673011042668
Q gi|254780233|r  102 ILCMVESVVVLVDAAEGPMPQTKFVVGKALK----IGLRPIVVVNKVDRSDARADEVINEVFDLFSALDATDAQLDFPIL  177 (624)
Q Consensus       102 ~l~~~DgaiLvVdA~eGv~~QT~~vl~~A~~----~~l~~IvvINKiDr~~a~~~~v~~ei~dlf~~l~a~de~ld~Pv~  177 (624)
T Consensus        69 yyr~a~~~ilVyDit~~~SF~~l~~W~~~i~~~~~~~~~iiLVGNK~DL~~~R~V-s~~e~~~~A~~~~------~~~f~  141 (202)
T cd04120          69 YYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDREI-SRQQGEKFAQQIT------GMRFC  141 (202)
T ss_pred             HHHHHCEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCHHHCCC-CHHHHHHHHHHCC------CCEEE
T ss_conf             8764144589985688899999999999999746688718987653650531787-9999999998279------98899


Q ss_pred             HHHHHCCEECCCCCCCCCCCCHHHHHHHHCCC
Q ss_conf             87886591646742233486413555321024
Q gi|254780233|r  178 YGSGRFGWMSDSSDGSRDQGMVPLLNLIVDHV  209 (624)
Q Consensus       178 ~~Sa~~G~~~~~~~~~~~~gl~~Lld~Ii~~i  209 (624)
T Consensus       142 EtSAkt~-----------~nV~e~F~~l~~~i  162 (202)
T cd04120         142 EASAKDN-----------FNVDEIFLKLVDDI  162 (202)
T ss_pred             ECCCCCC-----------CCHHHHHHHHHHHH
T ss_conf             9258999-----------69899999999999