HHsearch alignment for GI: 254780233 and conserved domain: cd04129
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=98.59 E-value=5.1e-07 Score=65.30 Aligned_cols=154 Identities=14% Similarity=0.120 Sum_probs=89.2
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCEECCCCHHHHHCCCEEEEEEEEEEECCEEEEEECCCCCCCCHHHHH
Q ss_conf 49998546898778899999983961423220000038857798709606467999998997999972898754079999
Q gi|254780233|r 21 NIAIIAHVDHGKTTLVDELLKQSGVFRDNQRVSERVMDCNDLEKERGITILAKVTSIVWNDVRINIVDTPGHADFGGEVE 100 (624)
Q Consensus 21 NiaIiaHvDhGKTTL~d~LL~~sG~~~~~~~v~~~vmD~~~~EreRGITI~a~~~~~~~~~~~iNiiDTPGH~DF~gEVe 100 (624)
T Consensus 3 KivllGd~~VGKTsLi~r~~~--~~f~~~y~--pTi~~~-----------~~~~i~v~~~~v~l~iwDTaG~e~~~~~~~ 67 (187)
T cd04129 3 KLVIVGDGACGKTSLLSVFTL--GEFPEEYH--PTVFEN-----------YVTDCRVDGKPVQLALWDTAGQEEYERLRP 67 (187)
T ss_pred EEEEECCCCCCHHHHHHHHHH--CCCCCCCC--CCEEEE-----------EEEEEEECCEEEEEEEEECCCCCCCCCCCC
T ss_conf 999999899768999999982--98999878--866789-----------899999999999999997888703454604
Q ss_pred HHHHHHCEEEEEEECCCCCCHHHH----HHHHHHH---HCCCCEEEEEECCCCCCCCH--------HHHH-HHHHHHHHH
Q ss_conf 998742178999976878864789----9999999---72997899997543667402--------5689-999988862
Q gi|254780233|r 101 RILCMVESVVVLVDAAEGPMPQTK----FVVGKAL---KIGLRPIVVVNKVDRSDARA--------DEVI-NEVFDLFSA 164 (624)
Q Consensus 101 r~l~~~DgaiLvVdA~eGv~~QT~----~vl~~A~---~~~l~~IvvINKiDr~~a~~--------~~v~-~ei~dlf~~ 164 (624)
T Consensus 68 ~~~~~a~~~ilvydi~~~---~Sf~~~~~~w~~~~~~~~~~~piilVGnK~DL~~~~~~~~~~~~~r~V~~~~g~~~a~~ 144 (187)
T cd04129 68 LSYSKAHVILIGFAVDTP---DSLENVRTKWIEEVRRYCPNVPVILVGLKKDLRQDAVAKEEYRTQRFVPIQQGKRVAKE 144 (187)
T ss_pred CEECCCCEEEEECCCCCH---HHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCHHHCCCCCHHHHHHHHHH
T ss_conf 123388589997026986---67999999999999985879988999886001134112111223155789999999998
Q ss_pred CCCCHHHCCHHHHHHHHHCCEECCCCCCCCCCCCHHHHHHHHCCC
Q ss_conf 267301104266887886591646742233486413555321024
Q gi|254780233|r 165 LDATDAQLDFPILYGSGRFGWMSDSSDGSRDQGMVPLLNLIVDHV 209 (624)
Q Consensus 165 l~a~de~ld~Pv~~~Sa~~G~~~~~~~~~~~~gl~~Lld~Ii~~i 209 (624)
T Consensus 145 ~~~~------~y~EtSAk~~-----------~nV~e~F~~~~r~~ 172 (187)
T cd04129 145 IGAK------KYMECSALTG-----------EGVDDVFEAATRAA 172 (187)
T ss_pred CCCC------EEEEECCCCC-----------CCHHHHHHHHHHHH
T ss_conf 4997------8999688999-----------79899999999999