HHsearch alignment for GI: 254780233 and conserved domain: cd04135

>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=98.92  E-value=2.1e-08  Score=74.32  Aligned_cols=156  Identities=15%  Similarity=0.162  Sum_probs=92.3

Q ss_pred             EEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCEECCCCHHHHHCCCEEEEEEEEEEECCEEEEEECCCCCCCCHHHHH
Q ss_conf             49998546898778899999983961423220000038857798709606467999998997999972898754079999
Q gi|254780233|r   21 NIAIIAHVDHGKTTLVDELLKQSGVFRDNQRVSERVMDCNDLEKERGITILAKVTSIVWNDVRINIVDTPGHADFGGEVE  100 (624)
Q Consensus        21 NiaIiaHvDhGKTTL~d~LL~~sG~~~~~~~v~~~vmD~~~~EreRGITI~a~~~~~~~~~~~iNiiDTPGH~DF~gEVe  100 (624)
T Consensus         2 Kiv~vGd~~VGKTsli~rf~~--~~f~~~y--~pTi~~~-----------~~~~i~v~~~~~~l~i~DTaG~e~~~~~~~   66 (174)
T cd04135           2 KCVVVGDGAVGKTCLLMSYAN--DAFPEEY--VPTVFDH-----------YAVSVTVGGKQYLLGLYDTAGQEDYDRLRP   66 (174)
T ss_pred             EEEEECCCCCCHHHHHHHHHH--CCCCCCC--CCEEEEE-----------EEEEEEECCEEEEEEEEECCCCCCCHHHHH
T ss_conf             899999899859999999962--9899886--8857520-----------227999999999999997976403155659


Q ss_pred             HHHHHHCEEEEEEECCCC-CCHHHHHHHHHHHH---CCCCEEEEEECCCCCCCCH----------HHH-HHHHHHHHHHC
Q ss_conf             998742178999976878-86478999999997---2997899997543667402----------568-99999888622
Q gi|254780233|r  101 RILCMVESVVVLVDAAEG-PMPQTKFVVGKALK---IGLRPIVVVNKVDRSDARA----------DEV-INEVFDLFSAL  165 (624)
Q Consensus       101 r~l~~~DgaiLvVdA~eG-v~~QT~~vl~~A~~---~~l~~IvvINKiDr~~a~~----------~~v-~~ei~dlf~~l  165 (624)
T Consensus        67 ~~~~~a~~~ilvydi~~~~Sf~~~~~~w~~~~~~~~~~~piilvgnK~DL~~~~~~~~~~~~~~~r~Vs~eeg~~~A~~~  146 (174)
T cd04135          67 LSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPYLLVGTQIDLRDDPKTLARLNDMKEKPVTVEQGQKLAKEI  146 (174)
T ss_pred             HHHCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECHHHCCCHHHHHHHCCCCCCCCCHHHHHHHHHHC
T ss_conf             98557876789843797788999999999999986849988999685230044345545300457663999999999977


Q ss_pred             CCCHHHCCHHHHHHHHHCCEECCCCCCCCCCCCHHHHHHHHCC
Q ss_conf             6730110426688788659164674223348641355532102
Q gi|254780233|r  166 DATDAQLDFPILYGSGRFGWMSDSSDGSRDQGMVPLLNLIVDH  208 (624)
Q Consensus       166 ~a~de~ld~Pv~~~Sa~~G~~~~~~~~~~~~gl~~Lld~Ii~~  208 (624)
T Consensus       147 g~------~~f~E~SAkt~-----------~nV~e~F~~~i~~  172 (174)
T cd04135         147 GA------HCYVECSALTQ-----------KGLKTVFDEAILA  172 (174)
T ss_pred             CC------CEEEEECCCCC-----------CCHHHHHHHHHHH
T ss_conf             99------89999054879-----------4989999999999