HHsearch alignment for GI: 254780233 and conserved domain: cd04135
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=98.92 E-value=2.1e-08 Score=74.32 Aligned_cols=156 Identities=15% Similarity=0.162 Sum_probs=92.3
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCEECCCCHHHHHCCCEEEEEEEEEEECCEEEEEECCCCCCCCHHHHH
Q ss_conf 49998546898778899999983961423220000038857798709606467999998997999972898754079999
Q gi|254780233|r 21 NIAIIAHVDHGKTTLVDELLKQSGVFRDNQRVSERVMDCNDLEKERGITILAKVTSIVWNDVRINIVDTPGHADFGGEVE 100 (624)
Q Consensus 21 NiaIiaHvDhGKTTL~d~LL~~sG~~~~~~~v~~~vmD~~~~EreRGITI~a~~~~~~~~~~~iNiiDTPGH~DF~gEVe 100 (624)
T Consensus 2 Kiv~vGd~~VGKTsli~rf~~--~~f~~~y--~pTi~~~-----------~~~~i~v~~~~~~l~i~DTaG~e~~~~~~~ 66 (174)
T cd04135 2 KCVVVGDGAVGKTCLLMSYAN--DAFPEEY--VPTVFDH-----------YAVSVTVGGKQYLLGLYDTAGQEDYDRLRP 66 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHH--CCCCCCC--CCEEEEE-----------EEEEEEECCEEEEEEEEECCCCCCCHHHHH
T ss_conf 899999899859999999962--9899886--8857520-----------227999999999999997976403155659
Q ss_pred HHHHHHCEEEEEEECCCC-CCHHHHHHHHHHHH---CCCCEEEEEECCCCCCCCH----------HHH-HHHHHHHHHHC
Q ss_conf 998742178999976878-86478999999997---2997899997543667402----------568-99999888622
Q gi|254780233|r 101 RILCMVESVVVLVDAAEG-PMPQTKFVVGKALK---IGLRPIVVVNKVDRSDARA----------DEV-INEVFDLFSAL 165 (624)
Q Consensus 101 r~l~~~DgaiLvVdA~eG-v~~QT~~vl~~A~~---~~l~~IvvINKiDr~~a~~----------~~v-~~ei~dlf~~l 165 (624)
T Consensus 67 ~~~~~a~~~ilvydi~~~~Sf~~~~~~w~~~~~~~~~~~piilvgnK~DL~~~~~~~~~~~~~~~r~Vs~eeg~~~A~~~ 146 (174)
T cd04135 67 LSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPYLLVGTQIDLRDDPKTLARLNDMKEKPVTVEQGQKLAKEI 146 (174)
T ss_pred HHHCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECHHHCCCHHHHHHHCCCCCCCCCHHHHHHHHHHC
T ss_conf 98557876789843797788999999999999986849988999685230044345545300457663999999999977
Q ss_pred CCCHHHCCHHHHHHHHHCCEECCCCCCCCCCCCHHHHHHHHCC
Q ss_conf 6730110426688788659164674223348641355532102
Q gi|254780233|r 166 DATDAQLDFPILYGSGRFGWMSDSSDGSRDQGMVPLLNLIVDH 208 (624)
Q Consensus 166 ~a~de~ld~Pv~~~Sa~~G~~~~~~~~~~~~gl~~Lld~Ii~~ 208 (624)
T Consensus 147 g~------~~f~E~SAkt~-----------~nV~e~F~~~i~~ 172 (174)
T cd04135 147 GA------HCYVECSALTQ-----------KGLKTVFDEAILA 172 (174)
T ss_pred CC------CEEEEECCCCC-----------CCHHHHHHHHHHH
T ss_conf 99------89999054879-----------4989999999999