HHsearch alignment for GI: 254780233 and conserved domain: cd04146
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=98.91 E-value=1.5e-08 Score=75.29 Aligned_cols=155 Identities=20% Similarity=0.229 Sum_probs=94.6
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCEECCCCHHHHHCCCEEEEEEEEEEECCEEEEEECCCCCCCCHHHH-H
Q ss_conf 999854689877889999998396142322000003885779870960646799999899799997289875407999-9
Q gi|254780233|r 22 IAIIAHVDHGKTTLVDELLKQSGVFRDNQRVSERVMDCNDLEKERGITILAKVTSIVWNDVRINIVDTPGHADFGGEV-E 100 (624)
Q Consensus 22 iaIiaHvDhGKTTL~d~LL~~sG~~~~~~~v~~~vmD~~~~EreRGITI~a~~~~~~~~~~~iNiiDTPGH~DF~gEV-e 100 (624)
T Consensus 2 iv~vGd~~VGKTsli~rf~~--~~f~~~y--~~T~----------~~-~~~~~~~v~~~~~~l~iwDtaG~e~~~~~~~~ 66 (165)
T cd04146 2 IAVLGASGVGKSALVVRFLT--KRFIGEY--DPNL----------ES-LYSRQVTIDGEQVSLEILDTAGQQQADTEQLE 66 (165)
T ss_pred EEEECCCCCCHHHHHHHHHH--CCCCCCC--CCCC----------CC-EEEEEEEECCEEEEEEEEECCCCCCCCHHHHH
T ss_conf 99999899778999999974--9899875--9955----------63-05799999999999999928985012201255
Q ss_pred HHHHHHCEEEEEEECCCCCCHHHHHHHHHHH-H-----CCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCHHHCCH
Q ss_conf 9987421789999768788647899999999-7-----299789999754366740256899999888622673011042
Q gi|254780233|r 101 RILCMVESVVVLVDAAEGPMPQTKFVVGKAL-K-----IGLRPIVVVNKVDRSDARADEVINEVFDLFSALDATDAQLDF 174 (624)
Q Consensus 101 r~l~~~DgaiLvVdA~eGv~~QT~~vl~~A~-~-----~~l~~IvvINKiDr~~a~~~~v~~ei~dlf~~l~a~de~ld~ 174 (624)
T Consensus 67 ~~~~~a~~~ilvydit~~~Sf~~~~~~~~~i~~~~~~~~~~piilVGNK~DL~~~r~V-s~ee~~~~a~-------~~~~ 138 (165)
T cd04146 67 RSIRWADGFVLVYSITDRSSFDEISQLKQLIREIKKRDREIPVILVGNKADLLHYRQV-STEEGEKLAS-------ELGC 138 (165)
T ss_pred HHCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCC-CHHHHHHHHH-------HCCC
T ss_conf 4304587899998658889999999999999998466999539984455452103677-9999999999-------8199
Q ss_pred HHHHHHHHCCEECCCCCCCCCCCCHHHHHHHHCCC
Q ss_conf 66887886591646742233486413555321024
Q gi|254780233|r 175 PILYGSGRFGWMSDSSDGSRDQGMVPLLNLIVDHV 209 (624)
Q Consensus 175 Pv~~~Sa~~G~~~~~~~~~~~~gl~~Lld~Ii~~i 209 (624)
T Consensus 139 ~f~E~SAk~~~----------~~V~~~F~~l~~~i 163 (165)
T cd04146 139 LFFEVSAAEDY----------DGVHSVFHELCREV 163 (165)
T ss_pred EEEEEECCCCC----------CCHHHHHHHHHHHH
T ss_conf 89997520878----------26999999999996