HHsearch alignment for GI: 254780233 and conserved domain: cd04146

>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=98.91  E-value=1.5e-08  Score=75.29  Aligned_cols=155  Identities=20%  Similarity=0.229  Sum_probs=94.6

Q ss_pred             EEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCEECCCCHHHHHCCCEEEEEEEEEEECCEEEEEECCCCCCCCHHHH-H
Q ss_conf             999854689877889999998396142322000003885779870960646799999899799997289875407999-9
Q gi|254780233|r   22 IAIIAHVDHGKTTLVDELLKQSGVFRDNQRVSERVMDCNDLEKERGITILAKVTSIVWNDVRINIVDTPGHADFGGEV-E  100 (624)
Q Consensus        22 iaIiaHvDhGKTTL~d~LL~~sG~~~~~~~v~~~vmD~~~~EreRGITI~a~~~~~~~~~~~iNiiDTPGH~DF~gEV-e  100 (624)
T Consensus         2 iv~vGd~~VGKTsli~rf~~--~~f~~~y--~~T~----------~~-~~~~~~~v~~~~~~l~iwDtaG~e~~~~~~~~   66 (165)
T cd04146           2 IAVLGASGVGKSALVVRFLT--KRFIGEY--DPNL----------ES-LYSRQVTIDGEQVSLEILDTAGQQQADTEQLE   66 (165)
T ss_pred             EEEECCCCCCHHHHHHHHHH--CCCCCCC--CCCC----------CC-EEEEEEEECCEEEEEEEEECCCCCCCCHHHHH
T ss_conf             99999899778999999974--9899875--9955----------63-05799999999999999928985012201255


Q ss_pred             HHHHHHCEEEEEEECCCCCCHHHHHHHHHHH-H-----CCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCHHHCCH
Q ss_conf             9987421789999768788647899999999-7-----299789999754366740256899999888622673011042
Q gi|254780233|r  101 RILCMVESVVVLVDAAEGPMPQTKFVVGKAL-K-----IGLRPIVVVNKVDRSDARADEVINEVFDLFSALDATDAQLDF  174 (624)
Q Consensus       101 r~l~~~DgaiLvVdA~eGv~~QT~~vl~~A~-~-----~~l~~IvvINKiDr~~a~~~~v~~ei~dlf~~l~a~de~ld~  174 (624)
T Consensus        67 ~~~~~a~~~ilvydit~~~Sf~~~~~~~~~i~~~~~~~~~~piilVGNK~DL~~~r~V-s~ee~~~~a~-------~~~~  138 (165)
T cd04146          67 RSIRWADGFVLVYSITDRSSFDEISQLKQLIREIKKRDREIPVILVGNKADLLHYRQV-STEEGEKLAS-------ELGC  138 (165)
T ss_pred             HHCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCC-CHHHHHHHHH-------HCCC
T ss_conf             4304587899998658889999999999999998466999539984455452103677-9999999999-------8199


Q ss_pred             HHHHHHHHCCEECCCCCCCCCCCCHHHHHHHHCCC
Q ss_conf             66887886591646742233486413555321024
Q gi|254780233|r  175 PILYGSGRFGWMSDSSDGSRDQGMVPLLNLIVDHV  209 (624)
Q Consensus       175 Pv~~~Sa~~G~~~~~~~~~~~~gl~~Lld~Ii~~i  209 (624)
T Consensus       139 ~f~E~SAk~~~----------~~V~~~F~~l~~~i  163 (165)
T cd04146         139 LFFEVSAAEDY----------DGVHSVFHELCREV  163 (165)
T ss_pred             EEEEEECCCCC----------CCHHHHHHHHHHHH
T ss_conf             89997520878----------26999999999996