HHsearch alignment for GI: 254780233 and conserved domain: cd04149
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=99.42 E-value=4.7e-12 Score=98.36 Aligned_cols=153 Identities=18% Similarity=0.225 Sum_probs=100.7
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCEECCCCHHHHHCCCEEEEEEEEEEECCEEEEEECCCCCCCCHHHH
Q ss_conf 14999854689877889999998396142322000003885779870960646799999899799997289875407999
Q gi|254780233|r 20 RNIAIIAHVDHGKTTLVDELLKQSGVFRDNQRVSERVMDCNDLEKERGITILAKVTSIVWNDVRINIVDTPGHADFGGEV 99 (624)
Q Consensus 20 RNiaIiaHvDhGKTTL~d~LL~~sG~~~~~~~v~~~vmD~~~~EreRGITI~a~~~~~~~~~~~iNiiDTPGH~DF~gEV 99 (624)
T Consensus 10 ~kililG~~~sGKTsil~~l~--~~~~~~----------~-------~pTvg~~~~~~~~~~~~l~iwD~~Gqe~~r~l~ 70 (168)
T cd04149 10 MRILMLGLDAAGKTTILYKLK--LGQSVT----------T-------IPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLW 70 (168)
T ss_pred EEEEEECCCCCCHHHHHHHHH--CCCCCC----------C-------CCCCCCEEEEEEECCEEEEEEECCCCCCCCCHH
T ss_conf 899999999999899999996--699876----------0-------262670079999898899999899997466065
Q ss_pred HHHHHHHCEEEEEEECCCCC-CHHHHHHHHHHH----HCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCHHHCCH
Q ss_conf 99987421789999768788-647899999999----7299789999754366740256899999888622673011042
Q gi|254780233|r 100 ERILCMVESVVVLVDAAEGP-MPQTKFVVGKAL----KIGLRPIVVVNKVDRSDARADEVINEVFDLFSALDATDAQLDF 174 (624)
Q Consensus 100 er~l~~~DgaiLvVdA~eGv-~~QT~~vl~~A~----~~~l~~IvvINKiDr~~a~~~~v~~ei~dlf~~l~a~de~ld~ 174 (624)
T Consensus 71 ~~y~~~~~~iifVvDstd~~~~~~~~~~l~~~l~~~~~~~~pilI~~NK~Dl~~~~~~~ei~~~l~l~-~~--~--~~~~ 145 (168)
T cd04149 71 RHYYTGTQGLIFVVDSADRDRIDEARQELHRIINDREMRDALLLVFANKQDLPDAMKPHEIQEKLGLT-RI--R--DRNW 145 (168)
T ss_pred HHHCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHCHHHCCCEEEEEEECCCCCCCCCHHHHHHHHCHH-HH--H--CCCC
T ss_conf 76437886689998377678999999999999714522798699999756677788999999997876-55--1--7980
Q ss_pred HHHHHHHHCCEECCCCCCCCCCCCHHHHHHHHC
Q ss_conf 668878865916467422334864135553210
Q gi|254780233|r 175 PILYGSGRFGWMSDSSDGSRDQGMVPLLNLIVD 207 (624)
Q Consensus 175 Pv~~~Sa~~G~~~~~~~~~~~~gl~~Lld~Ii~ 207 (624)
T Consensus 146 ~i~~~SA~tG-----------~Gv~e~f~WL~~ 167 (168)
T cd04149 146 YVQPSCATSG-----------DGLYEGLTWLSS 167 (168)
T ss_pred EEEEEECCCC-----------CCHHHHHHHHHC
T ss_conf 9998068789-----------697999999865