HHsearch alignment for GI: 254780233 and conserved domain: cd04149

>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=99.42  E-value=4.7e-12  Score=98.36  Aligned_cols=153  Identities=18%  Similarity=0.225  Sum_probs=100.7

Q ss_pred             CEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCEECCCCHHHHHCCCEEEEEEEEEEECCEEEEEECCCCCCCCHHHH
Q ss_conf             14999854689877889999998396142322000003885779870960646799999899799997289875407999
Q gi|254780233|r   20 RNIAIIAHVDHGKTTLVDELLKQSGVFRDNQRVSERVMDCNDLEKERGITILAKVTSIVWNDVRINIVDTPGHADFGGEV   99 (624)
Q Consensus        20 RNiaIiaHvDhGKTTL~d~LL~~sG~~~~~~~v~~~vmD~~~~EreRGITI~a~~~~~~~~~~~iNiiDTPGH~DF~gEV   99 (624)
T Consensus        10 ~kililG~~~sGKTsil~~l~--~~~~~~----------~-------~pTvg~~~~~~~~~~~~l~iwD~~Gqe~~r~l~   70 (168)
T cd04149          10 MRILMLGLDAAGKTTILYKLK--LGQSVT----------T-------IPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLW   70 (168)
T ss_pred             EEEEEECCCCCCHHHHHHHHH--CCCCCC----------C-------CCCCCCEEEEEEECCEEEEEEECCCCCCCCCHH
T ss_conf             899999999999899999996--699876----------0-------262670079999898899999899997466065


Q ss_pred             HHHHHHHCEEEEEEECCCCC-CHHHHHHHHHHH----HCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCHHHCCH
Q ss_conf             99987421789999768788-647899999999----7299789999754366740256899999888622673011042
Q gi|254780233|r  100 ERILCMVESVVVLVDAAEGP-MPQTKFVVGKAL----KIGLRPIVVVNKVDRSDARADEVINEVFDLFSALDATDAQLDF  174 (624)
Q Consensus       100 er~l~~~DgaiLvVdA~eGv-~~QT~~vl~~A~----~~~l~~IvvINKiDr~~a~~~~v~~ei~dlf~~l~a~de~ld~  174 (624)
T Consensus        71 ~~y~~~~~~iifVvDstd~~~~~~~~~~l~~~l~~~~~~~~pilI~~NK~Dl~~~~~~~ei~~~l~l~-~~--~--~~~~  145 (168)
T cd04149          71 RHYYTGTQGLIFVVDSADRDRIDEARQELHRIINDREMRDALLLVFANKQDLPDAMKPHEIQEKLGLT-RI--R--DRNW  145 (168)
T ss_pred             HHHCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHCHHHCCCEEEEEEECCCCCCCCCHHHHHHHHCHH-HH--H--CCCC
T ss_conf             76437886689998377678999999999999714522798699999756677788999999997876-55--1--7980


Q ss_pred             HHHHHHHHCCEECCCCCCCCCCCCHHHHHHHHC
Q ss_conf             668878865916467422334864135553210
Q gi|254780233|r  175 PILYGSGRFGWMSDSSDGSRDQGMVPLLNLIVD  207 (624)
Q Consensus       175 Pv~~~Sa~~G~~~~~~~~~~~~gl~~Lld~Ii~  207 (624)
T Consensus       146 ~i~~~SA~tG-----------~Gv~e~f~WL~~  167 (168)
T cd04149         146 YVQPSCATSG-----------DGLYEGLTWLSS  167 (168)
T ss_pred             EEEEEECCCC-----------CCHHHHHHHHHC
T ss_conf             9998068789-----------697999999865