HHsearch alignment for GI: 254780233 and conserved domain: cd04151
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=99.39 E-value=8.7e-12 Score=96.59 Aligned_cols=151 Identities=21% Similarity=0.238 Sum_probs=99.4
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCEECCCCHHHHHCCCEEEEEEEEEEECCEEEEEECCCCCCCCHHHHHH
Q ss_conf 99985468987788999999839614232200000388577987096064679999989979999728987540799999
Q gi|254780233|r 22 IAIIAHVDHGKTTLVDELLKQSGVFRDNQRVSERVMDCNDLEKERGITILAKVTSIVWNDVRINIVDTPGHADFGGEVER 101 (624)
Q Consensus 22 iaIiaHvDhGKTTL~d~LL~~sG~~~~~~~v~~~vmD~~~~EreRGITI~a~~~~~~~~~~~iNiiDTPGH~DF~gEVer 101 (624)
T Consensus 2 il~lG~~~~GKTsll~~~~--~~~~~~----------~~-------pTig~~~~~i~~~~~~~~iwD~~G~e~~r~~~~~ 62 (158)
T cd04151 2 ILILGLDNAGKTTILYRLQ--LGEVVT----------TI-------PTIGFNVETVTYKNLKFQVWDLGGQTSIRPYWRC 62 (158)
T ss_pred EEEECCCCCCHHHHHHHHH--CCCCCC----------CC-------CCCCCCEEEEEECCEEEEEEECCCCCCCCHHHHH
T ss_conf 9999999998999999997--099677----------57-------8488246999989889999967986244627887
Q ss_pred HHHHHCEEEEEEECCCCCCHH-HHHHHHHH----HHCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCHHHCCHHH
Q ss_conf 987421789999768788647-89999999----9729978999975436674025689999988862267301104266
Q gi|254780233|r 102 ILCMVESVVVLVDAAEGPMPQ-TKFVVGKA----LKIGLRPIVVVNKVDRSDARADEVINEVFDLFSALDATDAQLDFPI 176 (624)
Q Consensus 102 ~l~~~DgaiLvVdA~eGv~~Q-T~~vl~~A----~~~~l~~IvvINKiDr~~a~~~~v~~ei~dlf~~l~a~de~ld~Pv 176 (624)
T Consensus 63 y~~~~~~ii~VvD~sd~~~~~~~~~~l~~~l~~~~~~~~piliv~NK~Dl~~~~~~~~i~~~l~l~-~~--~--~~~~~~ 137 (158)
T cd04151 63 YYSNTDAIIYVVDSTDRDRLGTAKEELHAMLEEEELKGAVLLVFANKQDMPGALSEAEISEKLGLS-EL--K--DRTWSI 137 (158)
T ss_pred HCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHHHH-HH--H--CCCCEE
T ss_conf 466788999997457878999999999999834653698199999766776577999999998598-74--1--699689
Q ss_pred HHHHHHCCEECCCCCCCCCCCCHHHHHHHHC
Q ss_conf 8878865916467422334864135553210
Q gi|254780233|r 177 LYGSGRFGWMSDSSDGSRDQGMVPLLNLIVD 207 (624)
Q Consensus 177 ~~~Sa~~G~~~~~~~~~~~~gl~~Lld~Ii~ 207 (624)
T Consensus 138 ~~tSA~tG-----------~gV~e~f~wL~~ 157 (158)
T cd04151 138 FKTSAIKG-----------EGLDEGMDWLVN 157 (158)
T ss_pred EEEECCCC-----------CCHHHHHHHHHC
T ss_conf 99678789-----------399999999856