HHsearch alignment for GI: 254780233 and conserved domain: cd04151

>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=99.39  E-value=8.7e-12  Score=96.59  Aligned_cols=151  Identities=21%  Similarity=0.238  Sum_probs=99.4

Q ss_pred             EEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCEECCCCHHHHHCCCEEEEEEEEEEECCEEEEEECCCCCCCCHHHHHH
Q ss_conf             99985468987788999999839614232200000388577987096064679999989979999728987540799999
Q gi|254780233|r   22 IAIIAHVDHGKTTLVDELLKQSGVFRDNQRVSERVMDCNDLEKERGITILAKVTSIVWNDVRINIVDTPGHADFGGEVER  101 (624)
Q Consensus        22 iaIiaHvDhGKTTL~d~LL~~sG~~~~~~~v~~~vmD~~~~EreRGITI~a~~~~~~~~~~~iNiiDTPGH~DF~gEVer  101 (624)
T Consensus         2 il~lG~~~~GKTsll~~~~--~~~~~~----------~~-------pTig~~~~~i~~~~~~~~iwD~~G~e~~r~~~~~   62 (158)
T cd04151           2 ILILGLDNAGKTTILYRLQ--LGEVVT----------TI-------PTIGFNVETVTYKNLKFQVWDLGGQTSIRPYWRC   62 (158)
T ss_pred             EEEECCCCCCHHHHHHHHH--CCCCCC----------CC-------CCCCCCEEEEEECCEEEEEEECCCCCCCCHHHHH
T ss_conf             9999999998999999997--099677----------57-------8488246999989889999967986244627887


Q ss_pred             HHHHHCEEEEEEECCCCCCHH-HHHHHHHH----HHCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCHHHCCHHH
Q ss_conf             987421789999768788647-89999999----9729978999975436674025689999988862267301104266
Q gi|254780233|r  102 ILCMVESVVVLVDAAEGPMPQ-TKFVVGKA----LKIGLRPIVVVNKVDRSDARADEVINEVFDLFSALDATDAQLDFPI  176 (624)
Q Consensus       102 ~l~~~DgaiLvVdA~eGv~~Q-T~~vl~~A----~~~~l~~IvvINKiDr~~a~~~~v~~ei~dlf~~l~a~de~ld~Pv  176 (624)
T Consensus        63 y~~~~~~ii~VvD~sd~~~~~~~~~~l~~~l~~~~~~~~piliv~NK~Dl~~~~~~~~i~~~l~l~-~~--~--~~~~~~  137 (158)
T cd04151          63 YYSNTDAIIYVVDSTDRDRLGTAKEELHAMLEEEELKGAVLLVFANKQDMPGALSEAEISEKLGLS-EL--K--DRTWSI  137 (158)
T ss_pred             HCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHHHH-HH--H--CCCCEE
T ss_conf             466788999997457878999999999999834653698199999766776577999999998598-74--1--699689


Q ss_pred             HHHHHHCCEECCCCCCCCCCCCHHHHHHHHC
Q ss_conf             8878865916467422334864135553210
Q gi|254780233|r  177 LYGSGRFGWMSDSSDGSRDQGMVPLLNLIVD  207 (624)
Q Consensus       177 ~~~Sa~~G~~~~~~~~~~~~gl~~Lld~Ii~  207 (624)
T Consensus       138 ~~tSA~tG-----------~gV~e~f~wL~~  157 (158)
T cd04151         138 FKTSAIKG-----------EGLDEGMDWLVN  157 (158)
T ss_pred             EEEECCCC-----------CCHHHHHHHHHC
T ss_conf             99678789-----------399999999856