HHsearch alignment for GI: 254780233 and conserved domain: cd04153
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=99.42 E-value=3.5e-12 Score=99.20 Aligned_cols=154 Identities=22% Similarity=0.289 Sum_probs=104.4
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCEECCCCHHHHHCCCEEEEEEEEEEECCEEEEEECCCCCCCCHH
Q ss_conf 43149998546898778899999983961423220000038857798709606467999998997999972898754079
Q gi|254780233|r 18 QIRNIAIIAHVDHGKTTLVDELLKQSGVFRDNQRVSERVMDCNDLEKERGITILAKVTSIVWNDVRINIVDTPGHADFGG 97 (624)
Q Consensus 18 ~IRNiaIiaHvDhGKTTL~d~LL~~sG~~~~~~~v~~~vmD~~~~EreRGITI~a~~~~~~~~~~~iNiiDTPGH~DF~g 97 (624)
T Consensus 14 k~~KililG~~~sGKTsil~~l~~--~~~~~~-----------------~pT~G~~~~~i~~~~~~~~iwD~~G~e~~~~ 74 (174)
T cd04153 14 KEYKVIIVGLDNAGKTTILYQFLL--GEVVHT-----------------SPTIGSNVEEIVYKNIRFLMWDIGGQESLRS 74 (174)
T ss_pred CEEEEEEECCCCCCHHHHHHHHHC--CCCCCC-----------------CCCCCCCEEEEEECCEEEEEEECCCCCCCCC
T ss_conf 779999998999988999999973--992771-----------------6723604699997888999998999865662
Q ss_pred HHHHHHHHHCEEEEEEECCCC-CCHHHHHHHHHHHH----CCCCEEEEEECCCCCCCCH-HHHHHHHHHHHHHCCCCHHH
Q ss_conf 999998742178999976878-86478999999997----2997899997543667402-56899999888622673011
Q gi|254780233|r 98 EVERILCMVESVVVLVDAAEG-PMPQTKFVVGKALK----IGLRPIVVVNKVDRSDARA-DEVINEVFDLFSALDATDAQ 171 (624)
Q Consensus 98 EVer~l~~~DgaiLvVdA~eG-v~~QT~~vl~~A~~----~~l~~IvvINKiDr~~a~~-~~v~~ei~dlf~~l~a~de~ 171 (624)
T Consensus 75 ~~~~y~~~a~~ii~VvD~sd~~~~~~~~~~l~~~l~~~~~~~~pili~~NK~Dl~~~~~~~ei~~~-l~l~-~--~--~~ 148 (174)
T cd04153 75 SWNTYYTNTDAVILVIDSTDRERLPLTKEELYKMLAHEDLRKAVLLVLANKQDLKGAMTPAEISES-LGLT-S--I--RD 148 (174)
T ss_pred HHHHHHCCCCEEEEEEECCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCHHHHHHH-HHHH-H--H--HC
T ss_conf 267770577537999976788899999999999972610169828999955556557899999999-7477-7--6--35
Q ss_pred CCHHHHHHHHHCCEECCCCCCCCCCCCHHHHHHHHC
Q ss_conf 042668878865916467422334864135553210
Q gi|254780233|r 172 LDFPILYGSGRFGWMSDSSDGSRDQGMVPLLNLIVD 207 (624)
Q Consensus 172 ld~Pv~~~Sa~~G~~~~~~~~~~~~gl~~Lld~Ii~ 207 (624)
T Consensus 149 ~~~~~~~~SAktG-----------~Gv~e~f~wLa~ 173 (174)
T cd04153 149 HTWHIQGCCALTG-----------EGLPEGLDWIAS 173 (174)
T ss_pred CCCEEEEEECCCC-----------CCHHHHHHHHHC
T ss_conf 9809999668589-----------198999999866