HHsearch alignment for GI: 254780233 and conserved domain: cd04156
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=99.32 E-value=4.6e-11 Score=91.82 Aligned_cols=151 Identities=18% Similarity=0.263 Sum_probs=100.1
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCEECCCCHHHHHCCCEEEEEEEEEEECC-EEEEEECCCCCCCCHHHHH
Q ss_conf 999854689877889999998396142322000003885779870960646799999899-7999972898754079999
Q gi|254780233|r 22 IAIIAHVDHGKTTLVDELLKQSGVFRDNQRVSERVMDCNDLEKERGITILAKVTSIVWND-VRINIVDTPGHADFGGEVE 100 (624)
Q Consensus 22 iaIiaHvDhGKTTL~d~LL~~sG~~~~~~~v~~~vmD~~~~EreRGITI~a~~~~~~~~~-~~iNiiDTPGH~DF~gEVe 100 (624)
T Consensus 2 ivilG~~~~GKTsil~r~~--~~~~~~~-----------------~pTig~~~~~~~~~~~~~l~iwD~~G~e~~~~~~~ 62 (160)
T cd04156 2 VLLLGLDSAGKSTLLYKLK--HAELVTT-----------------IPTVGFNVEMLQLEKHLSLTVWDVGGQEKMRTVWK 62 (160)
T ss_pred EEEECCCCCCHHHHHHHHH--CCCCCCC-----------------CCCCCEEEEEEEECCEEEEEEEECCCCCCCCHHHH
T ss_conf 9999999999999999995--6987775-----------------77615038999989989999997898624741588
Q ss_pred HHHHHHCEEEEEEECCCCC-CHHHHHHHHHHHH----CCCCEEEEEECCCCCCCCH-HHHHHHHHHHHHHCCCCHHHCCH
Q ss_conf 9987421789999768788-6478999999997----2997899997543667402-56899999888622673011042
Q gi|254780233|r 101 RILCMVESVVVLVDAAEGP-MPQTKFVVGKALK----IGLRPIVVVNKVDRSDARA-DEVINEVFDLFSALDATDAQLDF 174 (624)
Q Consensus 101 r~l~~~DgaiLvVdA~eGv-~~QT~~vl~~A~~----~~l~~IvvINKiDr~~a~~-~~v~~ei~dlf~~l~a~de~ld~ 174 (624)
T Consensus 63 ~y~~~a~~iI~V~D~td~~~~~~~~~~~~~~l~~~~~~~~pili~~NK~Dl~~~~~~~ei~~~-l~~-~~~-~--~~~~~ 137 (160)
T cd04156 63 CYLENTDGLVYVVDSSDEARLDESQKELKHILKNEHIKGVPVVLLANKQDLPGALTAEEITRR-FKL-KKY-C--SDRDW 137 (160)
T ss_pred HHHCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCHHHHHHH-HHH-HHH-H--HCCCC
T ss_conf 774567789999856867887879999999986635378749999986336566799999999-869-999-8--53999
Q ss_pred HHHHHHHHCCEECCCCCCCCCCCCHHHHHHHHC
Q ss_conf 668878865916467422334864135553210
Q gi|254780233|r 175 PILYGSGRFGWMSDSSDGSRDQGMVPLLNLIVD 207 (624)
Q Consensus 175 Pv~~~Sa~~G~~~~~~~~~~~~gl~~Lld~Ii~ 207 (624)
T Consensus 138 ~i~~~SAktG-----------egi~e~f~~la~ 159 (160)
T cd04156 138 YVQPCSAVTG-----------EGLAEAFRKLAS 159 (160)
T ss_pred EEEEEECCCC-----------CCHHHHHHHHHC
T ss_conf 9998668849-----------599999999857