HHsearch alignment for GI: 254780233 and conserved domain: cd04156

>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=99.32  E-value=4.6e-11  Score=91.82  Aligned_cols=151  Identities=18%  Similarity=0.263  Sum_probs=100.1

Q ss_pred             EEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCEECCCCHHHHHCCCEEEEEEEEEEECC-EEEEEECCCCCCCCHHHHH
Q ss_conf             999854689877889999998396142322000003885779870960646799999899-7999972898754079999
Q gi|254780233|r   22 IAIIAHVDHGKTTLVDELLKQSGVFRDNQRVSERVMDCNDLEKERGITILAKVTSIVWND-VRINIVDTPGHADFGGEVE  100 (624)
Q Consensus        22 iaIiaHvDhGKTTL~d~LL~~sG~~~~~~~v~~~vmD~~~~EreRGITI~a~~~~~~~~~-~~iNiiDTPGH~DF~gEVe  100 (624)
T Consensus         2 ivilG~~~~GKTsil~r~~--~~~~~~~-----------------~pTig~~~~~~~~~~~~~l~iwD~~G~e~~~~~~~   62 (160)
T cd04156           2 VLLLGLDSAGKSTLLYKLK--HAELVTT-----------------IPTVGFNVEMLQLEKHLSLTVWDVGGQEKMRTVWK   62 (160)
T ss_pred             EEEECCCCCCHHHHHHHHH--CCCCCCC-----------------CCCCCEEEEEEEECCEEEEEEEECCCCCCCCHHHH
T ss_conf             9999999999999999995--6987775-----------------77615038999989989999997898624741588


Q ss_pred             HHHHHHCEEEEEEECCCCC-CHHHHHHHHHHHH----CCCCEEEEEECCCCCCCCH-HHHHHHHHHHHHHCCCCHHHCCH
Q ss_conf             9987421789999768788-6478999999997----2997899997543667402-56899999888622673011042
Q gi|254780233|r  101 RILCMVESVVVLVDAAEGP-MPQTKFVVGKALK----IGLRPIVVVNKVDRSDARA-DEVINEVFDLFSALDATDAQLDF  174 (624)
Q Consensus       101 r~l~~~DgaiLvVdA~eGv-~~QT~~vl~~A~~----~~l~~IvvINKiDr~~a~~-~~v~~ei~dlf~~l~a~de~ld~  174 (624)
T Consensus        63 ~y~~~a~~iI~V~D~td~~~~~~~~~~~~~~l~~~~~~~~pili~~NK~Dl~~~~~~~ei~~~-l~~-~~~-~--~~~~~  137 (160)
T cd04156          63 CYLENTDGLVYVVDSSDEARLDESQKELKHILKNEHIKGVPVVLLANKQDLPGALTAEEITRR-FKL-KKY-C--SDRDW  137 (160)
T ss_pred             HHHCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCHHHHHHH-HHH-HHH-H--HCCCC
T ss_conf             774567789999856867887879999999986635378749999986336566799999999-869-999-8--53999


Q ss_pred             HHHHHHHHCCEECCCCCCCCCCCCHHHHHHHHC
Q ss_conf             668878865916467422334864135553210
Q gi|254780233|r  175 PILYGSGRFGWMSDSSDGSRDQGMVPLLNLIVD  207 (624)
Q Consensus       175 Pv~~~Sa~~G~~~~~~~~~~~~gl~~Lld~Ii~  207 (624)
T Consensus       138 ~i~~~SAktG-----------egi~e~f~~la~  159 (160)
T cd04156         138 YVQPCSAVTG-----------EGLAEAFRKLAS  159 (160)
T ss_pred             EEEEEECCCC-----------CCHHHHHHHHHC
T ss_conf             9998668849-----------599999999857