HHsearch alignment for GI: 254780233 and conserved domain: cd04158

>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=99.28  E-value=6.9e-11  Score=90.70  Aligned_cols=154  Identities=20%  Similarity=0.225  Sum_probs=101.5

Q ss_pred             EEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCEECCCCHHHHHCCCEEEEEEEEEEECCEEEEEECCCCCCCCHHHHHH
Q ss_conf             99985468987788999999839614232200000388577987096064679999989979999728987540799999
Q gi|254780233|r   22 IAIIAHVDHGKTTLVDELLKQSGVFRDNQRVSERVMDCNDLEKERGITILAKVTSIVWNDVRINIVDTPGHADFGGEVER  101 (624)
Q Consensus        22 iaIiaHvDhGKTTL~d~LL~~sG~~~~~~~v~~~vmD~~~~EreRGITI~a~~~~~~~~~~~iNiiDTPGH~DF~gEVer  101 (624)
T Consensus         2 IlilGl~~sGKTtil~~l~--~~~~~~----------~~-------pT~G~~~~~i~~~~~~l~iwD~gG~~~~r~~w~~   62 (169)
T cd04158           2 VVTLGLDGAGKTTILFKLK--QDEFMQ----------PI-------PTIGFNVETVEYKNLKFTIWDVGGKHKLRPLWKH   62 (169)
T ss_pred             EEEECCCCCCHHHHHHHHH--CCCCCC----------CC-------CCCCCCEEEEEECCEEEEEEECCCCCCCCHHHHH
T ss_conf             9999989998899999995--799689----------77-------8688166999989889999989997244636787


Q ss_pred             HHHHHCEEEEEEECCCCC-CHHHHHHHHHHH----HCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCHHHCCHHH
Q ss_conf             987421789999768788-647899999999----729978999975436674025689999988862267301104266
Q gi|254780233|r  102 ILCMVESVVVLVDAAEGP-MPQTKFVVGKAL----KIGLRPIVVVNKVDRSDARADEVINEVFDLFSALDATDAQLDFPI  176 (624)
Q Consensus       102 ~l~~~DgaiLvVdA~eGv-~~QT~~vl~~A~----~~~l~~IvvINKiDr~~a~~~~v~~ei~dlf~~l~a~de~ld~Pv  176 (624)
T Consensus        63 Yy~~~~~iIfVvDssd~~~~~ea~~~l~~ll~~~~~~~~piLIlaNK~Dl~~~~~~~ei~~~l~l-~~~~---~~~~~~i  138 (169)
T cd04158          63 YYLNTQAVVFVVDSSHRDRVSEAHSELAKLLTEKELRDALLLIFANKQDVAGALSVEEMTELLSL-HKLC---CGRSWYI  138 (169)
T ss_pred             HCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCHHHHHHHHCC-HHHC---CCCCEEE
T ss_conf             55576279999986306779999999999971275379849999735567779899999998570-5452---6996299


Q ss_pred             HHHHHHCCEECCCCCCCCCCCCHHHHHHHHCCC
Q ss_conf             887886591646742233486413555321024
Q gi|254780233|r  177 LYGSGRFGWMSDSSDGSRDQGMVPLLNLIVDHV  209 (624)
Q Consensus       177 ~~~Sa~~G~~~~~~~~~~~~gl~~Lld~Ii~~i  209 (624)
T Consensus       139 ~~~SA~tG-----------~Gi~e~~~WL~~~i  160 (169)
T cd04158         139 QGCDARSG-----------MGLYEGLDWLSRQL  160 (169)
T ss_pred             EEEECCCC-----------CCHHHHHHHHHHHH
T ss_conf             95557279-----------59899999999999