HHsearch alignment for GI: 254780233 and conserved domain: cd04158
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=99.28 E-value=6.9e-11 Score=90.70 Aligned_cols=154 Identities=20% Similarity=0.225 Sum_probs=101.5
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCEECCCCHHHHHCCCEEEEEEEEEEECCEEEEEECCCCCCCCHHHHHH
Q ss_conf 99985468987788999999839614232200000388577987096064679999989979999728987540799999
Q gi|254780233|r 22 IAIIAHVDHGKTTLVDELLKQSGVFRDNQRVSERVMDCNDLEKERGITILAKVTSIVWNDVRINIVDTPGHADFGGEVER 101 (624)
Q Consensus 22 iaIiaHvDhGKTTL~d~LL~~sG~~~~~~~v~~~vmD~~~~EreRGITI~a~~~~~~~~~~~iNiiDTPGH~DF~gEVer 101 (624)
T Consensus 2 IlilGl~~sGKTtil~~l~--~~~~~~----------~~-------pT~G~~~~~i~~~~~~l~iwD~gG~~~~r~~w~~ 62 (169)
T cd04158 2 VVTLGLDGAGKTTILFKLK--QDEFMQ----------PI-------PTIGFNVETVEYKNLKFTIWDVGGKHKLRPLWKH 62 (169)
T ss_pred EEEECCCCCCHHHHHHHHH--CCCCCC----------CC-------CCCCCCEEEEEECCEEEEEEECCCCCCCCHHHHH
T ss_conf 9999989998899999995--799689----------77-------8688166999989889999989997244636787
Q ss_pred HHHHHCEEEEEEECCCCC-CHHHHHHHHHHH----HCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCHHHCCHHH
Q ss_conf 987421789999768788-647899999999----729978999975436674025689999988862267301104266
Q gi|254780233|r 102 ILCMVESVVVLVDAAEGP-MPQTKFVVGKAL----KIGLRPIVVVNKVDRSDARADEVINEVFDLFSALDATDAQLDFPI 176 (624)
Q Consensus 102 ~l~~~DgaiLvVdA~eGv-~~QT~~vl~~A~----~~~l~~IvvINKiDr~~a~~~~v~~ei~dlf~~l~a~de~ld~Pv 176 (624)
T Consensus 63 Yy~~~~~iIfVvDssd~~~~~ea~~~l~~ll~~~~~~~~piLIlaNK~Dl~~~~~~~ei~~~l~l-~~~~---~~~~~~i 138 (169)
T cd04158 63 YYLNTQAVVFVVDSSHRDRVSEAHSELAKLLTEKELRDALLLIFANKQDVAGALSVEEMTELLSL-HKLC---CGRSWYI 138 (169)
T ss_pred HCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCHHHHHHHHCC-HHHC---CCCCEEE
T ss_conf 55576279999986306779999999999971275379849999735567779899999998570-5452---6996299
Q ss_pred HHHHHHCCEECCCCCCCCCCCCHHHHHHHHCCC
Q ss_conf 887886591646742233486413555321024
Q gi|254780233|r 177 LYGSGRFGWMSDSSDGSRDQGMVPLLNLIVDHV 209 (624)
Q Consensus 177 ~~~Sa~~G~~~~~~~~~~~~gl~~Lld~Ii~~i 209 (624)
T Consensus 139 ~~~SA~tG-----------~Gi~e~~~WL~~~i 160 (169)
T cd04158 139 QGCDARSG-----------MGLYEGLDWLSRQL 160 (169)
T ss_pred EEEECCCC-----------CCHHHHHHHHHHHH
T ss_conf 95557279-----------59899999999999