HHsearch alignment for GI: 254780233 and conserved domain: cd04162

>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=99.09  E-value=2.8e-09  Score=80.09  Aligned_cols=119  Identities=22%  Similarity=0.263  Sum_probs=83.1

Q ss_pred             EEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCEECCCCHHHHHCCCEEEEEEEEEEECCEEEEEECCCCCCCCHHHHHH
Q ss_conf             99985468987788999999839614232200000388577987096064679999989979999728987540799999
Q gi|254780233|r   22 IAIIAHVDHGKTTLVDELLKQSGVFRDNQRVSERVMDCNDLEKERGITILAKVTSIVWNDVRINIVDTPGHADFGGEVER  101 (624)
Q Consensus        22 iaIiaHvDhGKTTL~d~LL~~sG~~~~~~~v~~~vmD~~~~EreRGITI~a~~~~~~~~~~~iNiiDTPGH~DF~gEVer  101 (624)
T Consensus         2 IlilGLd~aGKTTil~~l~~--~~~~~--~~--------------~PT~Gf~~~~i~~~~~~l~~wDlgGq~~~R~~W~~   63 (164)
T cd04162           2 ILVLGLDGAGKTSLLHSLSS--ERSLE--SV--------------VPTTGFNSVAIPTQDAIMELLEIGGSQNLRKYWKR   63 (164)
T ss_pred             EEEECCCCCCHHHHHHHHHC--CCCCC--CC--------------CCCCCCCEEEEEECCEEEEEEECCCHHHHHHHHHH
T ss_conf             99996799989999999816--99876--53--------------56327746999989999999853752888656998


Q ss_pred             HHHHHCEEEEEEECCCC-CCHHHHHHHHHHHH--CCCCEEEEEECCCCCCCCHHHHHHHH
Q ss_conf             98742178999976878-86478999999997--29978999975436674025689999
Q gi|254780233|r  102 ILCMVESVVVLVDAAEG-PMPQTKFVVGKALK--IGLRPIVVVNKVDRSDARADEVINEV  158 (624)
Q Consensus       102 ~l~~~DgaiLvVdA~eG-v~~QT~~vl~~A~~--~~l~~IvvINKiDr~~a~~~~v~~ei  158 (624)
T Consensus        64 Y~~~~~gIIfVVDssD~~rl~eak~~L~~ll~~~~~~PlLIlaNKqDl~~a~s~~ei~~~  123 (164)
T cd04162          64 YLSGSQGLIFVVDSADSERLPLARQELHQLLQHPPDLPLVVLANKQDLPAARSVQEIHKE  123 (164)
T ss_pred             HHHCCCEEEEEEECCCHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCHHHHHHH
T ss_conf             711775899999568888999999999999708799869999863243369999999986