HHsearch alignment for GI: 254780233 and conserved domain: cd04168

>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=100.00  E-value=0  Score=392.81  Aligned_cols=180  Identities=40%  Similarity=0.650  Sum_probs=165.1

Q ss_pred             EEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCC--EECCCCHHHHHCCCEEEEEEEEEEECCEEEEEECCCCCCCCHHH
Q ss_conf             4999854689877889999998396142322000--00388577987096064679999989979999728987540799
Q gi|254780233|r   21 NIAIIAHVDHGKTTLVDELLKQSGVFRDNQRVSE--RVMDCNDLEKERGITILAKVTSIVWNDVRINIVDTPGHADFGGE   98 (624)
Q Consensus        21 NiaIiaHvDhGKTTL~d~LL~~sG~~~~~~~v~~--~vmD~~~~EreRGITI~a~~~~~~~~~~~iNiiDTPGH~DF~gE   98 (624)
T Consensus         1 Niai~gH~~~GKTtL~e~lL~~~g~i~r~G~v~~g~t~~D~~~eE~~r~isi~~~~~~~~~~~~~~n~iDtPG~~dF~~e   80 (237)
T cd04168           1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQWEDTKVNLIDTPGHMDFIAE   80 (237)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHCCHHHHCCCEECCCCCCCCHHHHHHHCCEEEEEEEEEEECCEEEEEEECCCCHHHHHH
T ss_conf             98999389989999999999965712226633068303785499898487031058999989987999889884656668


Q ss_pred             HHHHHHHHCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHHHH---------------
Q ss_conf             99998742178999976878864789999999972997899997543667402568999998886---------------
Q gi|254780233|r   99 VERILCMVESVVVLVDAAEGPMPQTKFVVGKALKIGLRPIVVVNKVDRSDARADEVINEVFDLFS---------------  163 (624)
Q Consensus        99 Ver~l~~~DgaiLvVdA~eGv~~QT~~vl~~A~~~~l~~IvvINKiDr~~a~~~~v~~ei~dlf~---------------  163 (624)
T Consensus        81 ~~~al~~~D~av~Vv~a~~Gv~~~t~~~~~~~~~~~~P~iifiNKmDre~adf~~~l~~i~~~l~~~~~p~~~p~~~~~~  160 (237)
T cd04168          81 VERSLSVLDGAILVISAVEGVQAQTRILWRLLRKLNIPTIIFVNKIDRAGADLEKVYQEIKEKLSSDIVPMQKVGLAPNI  160 (237)
T ss_pred             HHHHHHHCCCEEEEEECCCCCCCCHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHHHCCCEEEEECCCCCCCC
T ss_conf             98897634816999965888223449999999985998599862445789999999999999978974767777555664


Q ss_pred             ------------HCC-CCHHHCC--------------------------HHHHHHHHHCCEECCCCCCCCCCCCHHHHHH
Q ss_conf             ------------226-7301104--------------------------2668878865916467422334864135553
Q gi|254780233|r  164 ------------ALD-ATDAQLD--------------------------FPILYGSGRFGWMSDSSDGSRDQGMVPLLNL  204 (624)
Q Consensus       164 ------------~l~-a~de~ld--------------------------~Pv~~~Sa~~G~~~~~~~~~~~~gl~~Lld~  204 (624)
T Consensus       161 ~~~~~~~~~liE~vae~DD~LlEkyLe~~elt~eel~~~L~~~~~~g~i~PV~~GSA~~n-----------~GV~~LLd~  229 (237)
T cd04168         161 CETNEIDDEFWETLAEGDDELLEKYLEGGPIEELELDNELSARIAKRKVFPVYHGSALKG-----------IGIEELLEG  229 (237)
T ss_pred             CCCCCCCHHHHHHHHCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCC-----------CCHHHHHHH
T ss_conf             445441088999876469999998857898678899999999997492988996789989-----------599999999


Q ss_pred             HHCCCCC
Q ss_conf             2102454
Q gi|254780233|r  205 IVDHVPP  211 (624)
Q Consensus       205 Ii~~iP~  211 (624)
T Consensus       230 i~~~~PS  236 (237)
T cd04168         230 ITKLFPT  236 (237)
T ss_pred             HHHHCCC
T ss_conf             9987789