HHsearch alignment for GI: 254780233 and conserved domain: cd04168
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=100.00 E-value=0 Score=392.81 Aligned_cols=180 Identities=40% Similarity=0.650 Sum_probs=165.1
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCC--EECCCCHHHHHCCCEEEEEEEEEEECCEEEEEECCCCCCCCHHH
Q ss_conf 4999854689877889999998396142322000--00388577987096064679999989979999728987540799
Q gi|254780233|r 21 NIAIIAHVDHGKTTLVDELLKQSGVFRDNQRVSE--RVMDCNDLEKERGITILAKVTSIVWNDVRINIVDTPGHADFGGE 98 (624)
Q Consensus 21 NiaIiaHvDhGKTTL~d~LL~~sG~~~~~~~v~~--~vmD~~~~EreRGITI~a~~~~~~~~~~~iNiiDTPGH~DF~gE 98 (624)
T Consensus 1 Niai~gH~~~GKTtL~e~lL~~~g~i~r~G~v~~g~t~~D~~~eE~~r~isi~~~~~~~~~~~~~~n~iDtPG~~dF~~e 80 (237)
T cd04168 1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQWEDTKVNLIDTPGHMDFIAE 80 (237)
T ss_pred CEEEECCCCCCHHHHHHHHHHHCCHHHHCCCEECCCCCCCCHHHHHHHCCEEEEEEEEEEECCEEEEEEECCCCHHHHHH
T ss_conf 98999389989999999999965712226633068303785499898487031058999989987999889884656668
Q ss_pred HHHHHHHHCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHHHH---------------
Q ss_conf 99998742178999976878864789999999972997899997543667402568999998886---------------
Q gi|254780233|r 99 VERILCMVESVVVLVDAAEGPMPQTKFVVGKALKIGLRPIVVVNKVDRSDARADEVINEVFDLFS--------------- 163 (624)
Q Consensus 99 Ver~l~~~DgaiLvVdA~eGv~~QT~~vl~~A~~~~l~~IvvINKiDr~~a~~~~v~~ei~dlf~--------------- 163 (624)
T Consensus 81 ~~~al~~~D~av~Vv~a~~Gv~~~t~~~~~~~~~~~~P~iifiNKmDre~adf~~~l~~i~~~l~~~~~p~~~p~~~~~~ 160 (237)
T cd04168 81 VERSLSVLDGAILVISAVEGVQAQTRILWRLLRKLNIPTIIFVNKIDRAGADLEKVYQEIKEKLSSDIVPMQKVGLAPNI 160 (237)
T ss_pred HHHHHHHCCCEEEEEECCCCCCCCHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHHHCCCEEEEECCCCCCCC
T ss_conf 98897634816999965888223449999999985998599862445789999999999999978974767777555664
Q ss_pred ------------HCC-CCHHHCC--------------------------HHHHHHHHHCCEECCCCCCCCCCCCHHHHHH
Q ss_conf ------------226-7301104--------------------------2668878865916467422334864135553
Q gi|254780233|r 164 ------------ALD-ATDAQLD--------------------------FPILYGSGRFGWMSDSSDGSRDQGMVPLLNL 204 (624)
Q Consensus 164 ------------~l~-a~de~ld--------------------------~Pv~~~Sa~~G~~~~~~~~~~~~gl~~Lld~ 204 (624)
T Consensus 161 ~~~~~~~~~liE~vae~DD~LlEkyLe~~elt~eel~~~L~~~~~~g~i~PV~~GSA~~n-----------~GV~~LLd~ 229 (237)
T cd04168 161 CETNEIDDEFWETLAEGDDELLEKYLEGGPIEELELDNELSARIAKRKVFPVYHGSALKG-----------IGIEELLEG 229 (237)
T ss_pred CCCCCCCHHHHHHHHCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCC-----------CCHHHHHHH
T ss_conf 445441088999876469999998857898678899999999997492988996789989-----------599999999
Q ss_pred HHCCCCC
Q ss_conf 2102454
Q gi|254780233|r 205 IVDHVPP 211 (624)
Q Consensus 205 Ii~~iP~ 211 (624)
T Consensus 230 i~~~~PS 236 (237)
T cd04168 230 ITKLFPT 236 (237)
T ss_pred HHHHCCC
T ss_conf 9987789