HHsearch alignment for GI: 254780233 and conserved domain: cd04172
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=98.48 E-value=2.9e-06 Score=60.31 Aligned_cols=154 Identities=13% Similarity=0.165 Sum_probs=89.7
Q ss_pred CC-EEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCEECCCCHHHHHCCCEEEE-EEEEEEECC--EEEEEECCCCCCC
Q ss_conf 31-4999854689877889999998396142322000003885779870960646-799999899--7999972898754
Q gi|254780233|r 19 IR-NIAIIAHVDHGKTTLVDELLKQSGVFRDNQRVSERVMDCNDLEKERGITILA-KVTSIVWND--VRINIVDTPGHAD 94 (624)
Q Consensus 19 IR-NiaIiaHvDhGKTTL~d~LL~~sG~~~~~~~v~~~vmD~~~~EreRGITI~a-~~~~~~~~~--~~iNiiDTPGH~D 94 (624)
T Consensus 4 ik~KivlvGd~~VGKTsLi~r~~--~~~F~~~y~----------------pTi~~~~~~~~~i~~~~v~l~iwDTaGqe~ 65 (182)
T cd04172 4 VKCKIVVVGDSQCGKTALLHVFA--KDCFPENYV----------------PTVFENYTASFEIDTQRIELSLWDTSGSPY 65 (182)
T ss_pred EEEEEEEECCCCCCHHHHHHHHH--HCCCCCCCC----------------CEEEEEEEEEEEECCEEEEEEEEECCCCHH
T ss_conf 04899999999989999999998--399999868----------------735322689999999999999996898620
Q ss_pred CHHHHHHHHHHHCEEEEEEECCCCCCHHH-HHHHHHHHH---CCCCEEEEEECCCCCCCCHHH----------H-HHHHH
Q ss_conf 07999999874217899997687886478-999999997---299789999754366740256----------8-99999
Q gi|254780233|r 95 FGGEVERILCMVESVVVLVDAAEGPMPQT-KFVVGKALK---IGLRPIVVVNKVDRSDARADE----------V-INEVF 159 (624)
Q Consensus 95 F~gEVer~l~~~DgaiLvVdA~eGv~~QT-~~vl~~A~~---~~l~~IvvINKiDr~~a~~~~----------v-~~ei~ 159 (624)
T Consensus 66 f~~l~~~~y~~~~~~ilvydit~~~Sf~~v~~~W~~ei~~~~~~~~iiLVGnK~DLr~~~~~~~~l~~~~~~~Vs~eeg~ 145 (182)
T cd04172 66 YDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDLTTLVELSNHRQTPVSYDQGA 145 (182)
T ss_pred CCCCCHHHHCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHCCCCCCCHHHHH
T ss_conf 12212555127878999964897788999999999999986879988999617101244145667764567786999999
Q ss_pred HHHHHCCCCHHHCCHHHHHHHHHCCEECCCCCCCCCCCCHHHHHHHH
Q ss_conf 88862267301104266887886591646742233486413555321
Q gi|254780233|r 160 DLFSALDATDAQLDFPILYGSGRFGWMSDSSDGSRDQGMVPLLNLIV 206 (624)
Q Consensus 160 dlf~~l~a~de~ld~Pv~~~Sa~~G~~~~~~~~~~~~gl~~Lld~Ii 206 (624)
T Consensus 146 ~~A~~~g~------~~y~EtSAk~~----------~n~V~e~F~~a~ 176 (182)
T cd04172 146 NMAKQIGA------ATYIECSALQS----------ENSVRDIFHVAT 176 (182)
T ss_pred HHHHHCCC------CEEEECCCCCC----------CCCHHHHHHHHH
T ss_conf 99997699------79999170789----------959899999999