HHsearch alignment for GI: 254780233 and conserved domain: smart00053
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=96.69 E-value=0.036 Score=33.42 Aligned_cols=129 Identities=22% Similarity=0.358 Sum_probs=68.8
Q ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHCCC-C-CCC-CCCC----------------C-------EECCCCHHHH-----
Q ss_conf 024314999854689877889999998396-1-423-2200----------------0-------0038857798-----
Q gi|254780233|r 16 YMQIRNIAIIAHVDHGKTTLVDELLKQSGV-F-RDN-QRVS----------------E-------RVMDCNDLEK----- 64 (624)
Q Consensus 16 ~~~IRNiaIiaHvDhGKTTL~d~LL~~sG~-~-~~~-~~v~----------------~-------~vmD~~~~Er----- 64 (624)
T Consensus 23 ~i~LPqiVVvGdQSsGKSSvLEai---tGi~FlPr~~g~cTR~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~ 99 (240)
T smart00053 23 DLDLPQIAVVGGQSAGKSSVLENF---VGRDFLPRGSGIVTRRPLILQLINSSTEYAEFLHCKGKKFTDFDEVRNEIEAE 99 (240)
T ss_pred CCCCCEEEEECCCCCCHHHHHHHH---HCCCCCCCCCCCEECCEEEEEEECCCCCCEEEEECCCCCCCCHHHHHHHHHHH
T ss_conf 878984899888787589999998---78875556897276440699973388651247743786348989999999998
Q ss_pred -HC--C--CEEEEEEEEEEECC---EEEEEECCCCCCC--C----HHHHHHHHHHH-------CE-EEEEEECCCCCCHH
Q ss_conf -70--9--60646799999899---7999972898754--0----79999998742-------17-89999768788647
Q gi|254780233|r 65 -ER--G--ITILAKVTSIVWND---VRINIVDTPGHAD--F----GGEVERILCMV-------ES-VVVLVDAAEGPMPQ 122 (624)
Q Consensus 65 -eR--G--ITI~a~~~~~~~~~---~~iNiiDTPGH~D--F----~gEVer~l~~~-------Dg-aiLvVdA~eGv~~Q 122 (624)
T Consensus 100 ~~~~~g~~~~~s~~~l~lei~gP~~p~LTlvDLPGl~~~~~~~q~~~~~~~v~~lv~~Yi~~p~tIILaVv~a~~D~a-- 177 (240)
T smart00053 100 TDRVTGTNKGISPVPINLRVYSPHVLNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVDLA-- 177 (240)
T ss_pred HHHHCCCCCCCCCCCEEEEEECCCCCCCEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCHH--
T ss_conf 875326788767885599994799988544147541246789985679999999999984798806999840785676--
Q ss_pred HHHHHHHHHHC---CCCEEEEEECCCCCCC
Q ss_conf 89999999972---9978999975436674
Q gi|254780233|r 123 TKFVVGKALKI---GLRPIVVVNKVDRSDA 149 (624)
Q Consensus 123 T~~vl~~A~~~---~l~~IvvINKiDr~~a 149 (624)
T Consensus 178 nq~~l~lAr~~Dp~g~RTiGVlTKpDl~~~ 207 (240)
T smart00053 178 NSDALKLAKEVDPQGERTIGVITKLDLMDE 207 (240)
T ss_pred HHHHHHHHHHHCCCCCEEEEEECCCCCCCC
T ss_conf 619999999719999828999735334577