HHsearch alignment for GI: 254780233 and conserved domain: smart00175
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=99.12 E-value=5.1e-10 Score=85.00 Aligned_cols=153 Identities=18% Similarity=0.239 Sum_probs=94.4
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCEECCCCHHHHHCCCEEEEEEEEEEECC--EEEEEECCCCCCCCHHHH
Q ss_conf 999854689877889999998396142322000003885779870960646799999899--799997289875407999
Q gi|254780233|r 22 IAIIAHVDHGKTTLVDELLKQSGVFRDNQRVSERVMDCNDLEKERGITILAKVTSIVWND--VRINIVDTPGHADFGGEV 99 (624)
Q Consensus 22 iaIiaHvDhGKTTL~d~LL~~sG~~~~~~~v~~~vmD~~~~EreRGITI~a~~~~~~~~~--~~iNiiDTPGH~DF~gEV 99 (624)
T Consensus 3 i~vvG~~~vGKTsli~r~~~--~~f~~~~~~------------Ti~~~~~~~--~i~~~~~~~~l~iwDt~G~e~~~~l~ 66 (164)
T smart00175 3 IILIGDSGVGKSSLLSRFTD--GKFSEQYKS------------TIGVDFKTK--TIEVDGKRVKLQIWDTAGQERFRSIT 66 (164)
T ss_pred EEEECCCCCCHHHHHHHHHH--CCCCCCCCC------------CCCEEEEEE--EEEECCEEEEEEEEECCCCHHHHHHH
T ss_conf 99999899779999999941--999998688------------456666779--99999999999999679944664779
Q ss_pred HHHHHHHCEEEEEEECCCCCCHHHHHHHHHHHH----CCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCHHHCCHH
Q ss_conf 999874217899997687886478999999997----2997899997543667402568999998886226730110426
Q gi|254780233|r 100 ERILCMVESVVVLVDAAEGPMPQTKFVVGKALK----IGLRPIVVVNKVDRSDARADEVINEVFDLFSALDATDAQLDFP 175 (624)
Q Consensus 100 er~l~~~DgaiLvVdA~eGv~~QT~~vl~~A~~----~~l~~IvvINKiDr~~a~~~~v~~ei~dlf~~l~a~de~ld~P 175 (624)
T Consensus 67 ~~~~~~~~~~ilvfdi~~~~Sf~~i~~w~~~i~~~~~~~~piilvgnK~Dl~~~r~V~-~~e~~~~a~-------~~~~~ 138 (164)
T smart00175 67 SSYYRGAVGALLVYDITNRESFENLKNWLKELREYADPNVVIMLVGNKSDLEDQRQVS-REEAEAFAE-------EHGLP 138 (164)
T ss_pred HHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCHHHHCCCC-HHHHHHHHH-------HCCCE
T ss_conf 9883366536884368998999999999999998679998255116456856518799-999999999-------84997
Q ss_pred HHHHHHHCCEECCCCCCCCCCCCHHHHHHHHCCC
Q ss_conf 6887886591646742233486413555321024
Q gi|254780233|r 176 ILYGSGRFGWMSDSSDGSRDQGMVPLLNLIVDHV 209 (624)
Q Consensus 176 v~~~Sa~~G~~~~~~~~~~~~gl~~Lld~Ii~~i 209 (624)
T Consensus 139 ~~e~SAk~~-----------~~v~e~F~~l~~~i 161 (164)
T smart00175 139 FFETSAKTN-----------TNVEEAFEELAREI 161 (164)
T ss_pred EEEECCCCC-----------CCHHHHHHHHHHHH
T ss_conf 999831669-----------08899999999999