HHsearch alignment for GI: 254780233 and conserved domain: smart00177

>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=99.36  E-value=1.7e-11  Score=94.67  Aligned_cols=158  Identities=19%  Similarity=0.229  Sum_probs=103.6

Q ss_pred             CCCCCEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCEECCCCHHHHHCCCEEEEEEEEEEECCEEEEEECCCCCCCC
Q ss_conf             02431499985468987788999999839614232200000388577987096064679999989979999728987540
Q gi|254780233|r   16 YMQIRNIAIIAHVDHGKTTLVDELLKQSGVFRDNQRVSERVMDCNDLEKERGITILAKVTSIVWNDVRINIVDTPGHADF   95 (624)
Q Consensus        16 ~~~IRNiaIiaHvDhGKTTL~d~LL~~sG~~~~~~~v~~~vmD~~~~EreRGITI~a~~~~~~~~~~~iNiiDTPGH~DF   95 (624)
T Consensus        11 kk~~-kililG~~~~GKTsil~~l~~--~~~------~~~-----------~pTvg~~~~~~~~~~~~l~iwD~~Gqe~~   70 (175)
T smart00177       11 NKEM-RILMVGLDAAGKTTILYKLKL--GES------VTT-----------IPTIGFNVETVTYKNISFTVWDVGGQDKI   70 (175)
T ss_pred             CCEE-EEEEECCCCCCHHHHHHHHHC--CCC------CCC-----------CCCCCCEEEEEEECCEEEEEEECCCCCCC
T ss_conf             8889-999998899998999999965--997------775-----------79788107999989899999989998545


Q ss_pred             HHHHHHHHHHHCEEEEEEECCCC-CCHHHHHHHHHHH----HCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCHH
Q ss_conf             79999998742178999976878-8647899999999----729978999975436674025689999988862267301
Q gi|254780233|r   96 GGEVERILCMVESVVVLVDAAEG-PMPQTKFVVGKAL----KIGLRPIVVVNKVDRSDARADEVINEVFDLFSALDATDA  170 (624)
Q Consensus        96 ~gEVer~l~~~DgaiLvVdA~eG-v~~QT~~vl~~A~----~~~l~~IvvINKiDr~~a~~~~v~~ei~dlf~~l~a~de  170 (624)
T Consensus        71 r~l~~~Yy~~a~~iIfVvD~sd~~~~~~~~~~l~~~l~~~~~~~~piLil~NK~Dl~~~~~~~ei~~~l~l~~---~~~-  146 (175)
T smart00177       71 RPLWRHYYTNTQGLIFVVDSNDRDRIDEAREELHRMLNEDELRDAVILVFANKQDLPDAMKAAEITEKLGLHS---IRD-  146 (175)
T ss_pred             CHHHHHHCCCCCEEEEEEECCCHHHHHHHHHHHHHHHCCHHHCCCEEEEEEECCCCCCCCCHHHHHHHHCHHH---HCC-
T ss_conf             5367775577618999986687789999999999996315316986999984566767889999999968665---407-


Q ss_pred             HCCHHHHHHHHHCCEECCCCCCCCCCCCHHHHHHHHCCC
Q ss_conf             104266887886591646742233486413555321024
Q gi|254780233|r  171 QLDFPILYGSGRFGWMSDSSDGSRDQGMVPLLNLIVDHV  209 (624)
Q Consensus       171 ~ld~Pv~~~Sa~~G~~~~~~~~~~~~gl~~Lld~Ii~~i  209 (624)
T Consensus       147 -~~~~i~~~SA~tG-----------~GI~e~f~wL~~~i  173 (175)
T smart00177      147 -RNWYIQPTCATSG-----------DGLYEGLTWLSNNL  173 (175)
T ss_pred             -CCEEEEEEECCCC-----------CCHHHHHHHHHHHH
T ss_conf             -9759998268789-----------69899999999984