HHsearch alignment for GI: 254780233 and conserved domain: smart00177
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=99.36 E-value=1.7e-11 Score=94.67 Aligned_cols=158 Identities=19% Similarity=0.229 Sum_probs=103.6
Q ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCEECCCCHHHHHCCCEEEEEEEEEEECCEEEEEECCCCCCCC
Q ss_conf 02431499985468987788999999839614232200000388577987096064679999989979999728987540
Q gi|254780233|r 16 YMQIRNIAIIAHVDHGKTTLVDELLKQSGVFRDNQRVSERVMDCNDLEKERGITILAKVTSIVWNDVRINIVDTPGHADF 95 (624)
Q Consensus 16 ~~~IRNiaIiaHvDhGKTTL~d~LL~~sG~~~~~~~v~~~vmD~~~~EreRGITI~a~~~~~~~~~~~iNiiDTPGH~DF 95 (624)
T Consensus 11 kk~~-kililG~~~~GKTsil~~l~~--~~~------~~~-----------~pTvg~~~~~~~~~~~~l~iwD~~Gqe~~ 70 (175)
T smart00177 11 NKEM-RILMVGLDAAGKTTILYKLKL--GES------VTT-----------IPTIGFNVETVTYKNISFTVWDVGGQDKI 70 (175)
T ss_pred CCEE-EEEEECCCCCCHHHHHHHHHC--CCC------CCC-----------CCCCCCEEEEEEECCEEEEEEECCCCCCC
T ss_conf 8889-999998899998999999965--997------775-----------79788107999989899999989998545
Q ss_pred HHHHHHHHHHHCEEEEEEECCCC-CCHHHHHHHHHHH----HCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCHH
Q ss_conf 79999998742178999976878-8647899999999----729978999975436674025689999988862267301
Q gi|254780233|r 96 GGEVERILCMVESVVVLVDAAEG-PMPQTKFVVGKAL----KIGLRPIVVVNKVDRSDARADEVINEVFDLFSALDATDA 170 (624)
Q Consensus 96 ~gEVer~l~~~DgaiLvVdA~eG-v~~QT~~vl~~A~----~~~l~~IvvINKiDr~~a~~~~v~~ei~dlf~~l~a~de 170 (624)
T Consensus 71 r~l~~~Yy~~a~~iIfVvD~sd~~~~~~~~~~l~~~l~~~~~~~~piLil~NK~Dl~~~~~~~ei~~~l~l~~---~~~- 146 (175)
T smart00177 71 RPLWRHYYTNTQGLIFVVDSNDRDRIDEAREELHRMLNEDELRDAVILVFANKQDLPDAMKAAEITEKLGLHS---IRD- 146 (175)
T ss_pred CHHHHHHCCCCCEEEEEEECCCHHHHHHHHHHHHHHHCCHHHCCCEEEEEEECCCCCCCCCHHHHHHHHCHHH---HCC-
T ss_conf 5367775577618999986687789999999999996315316986999984566767889999999968665---407-
Q ss_pred HCCHHHHHHHHHCCEECCCCCCCCCCCCHHHHHHHHCCC
Q ss_conf 104266887886591646742233486413555321024
Q gi|254780233|r 171 QLDFPILYGSGRFGWMSDSSDGSRDQGMVPLLNLIVDHV 209 (624)
Q Consensus 171 ~ld~Pv~~~Sa~~G~~~~~~~~~~~~gl~~Lld~Ii~~i 209 (624)
T Consensus 147 -~~~~i~~~SA~tG-----------~GI~e~f~wL~~~i 173 (175)
T smart00177 147 -RNWYIQPTCATSG-----------DGLYEGLTWLSNNL 173 (175)
T ss_pred -CCEEEEEEECCCC-----------CCHHHHHHHHHHHH
T ss_conf -9759998268789-----------69899999999984