HHsearch alignment for GI: 254780233 and conserved domain: smart00178
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=99.22 E-value=3.4e-10 Score=86.16 Aligned_cols=162 Identities=16% Similarity=0.167 Sum_probs=104.3
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCEECCCCHHHHHCCCEEEEEEEEEEECCEEEEEECCCCCCCCHH
Q ss_conf 43149998546898778899999983961423220000038857798709606467999998997999972898754079
Q gi|254780233|r 18 QIRNIAIIAHVDHGKTTLVDELLKQSGVFRDNQRVSERVMDCNDLEKERGITILAKVTSIVWNDVRINIVDTPGHADFGG 97 (624)
Q Consensus 18 ~IRNiaIiaHvDhGKTTL~d~LL~~sG~~~~~~~v~~~vmD~~~~EreRGITI~a~~~~~~~~~~~iNiiDTPGH~DF~g 97 (624)
T Consensus 16 ke~~ililGLd~aGKTTil~~lk~--~~------~~~----~~-------PT~g~~~e~~~~~~~~~~~wDlgG~~~~R~ 76 (184)
T smart00178 16 KHAKILFLGLDNAGKTTLLHMLKN--DR------LAQ----HQ-------PTQHPTSEELAIGNIKFTTFDLGGHQQARR 76 (184)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHC--CC------CCC----CC-------CCCCCCEEEEEECCEEEEEEECCCCHHHHH
T ss_conf 614799996588988999999806--99------753----05-------787886489999999999998898777889
Q ss_pred HHHHHHHHHCEEEEEEECCCC-CCHHHHHHHHHHH----HCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHCC--CCHH
Q ss_conf 999998742178999976878-8647899999999----72997899997543667402568999998886226--7301
Q gi|254780233|r 98 EVERILCMVESVVVLVDAAEG-PMPQTKFVVGKAL----KIGLRPIVVVNKVDRSDARADEVINEVFDLFSALD--ATDA 170 (624)
Q Consensus 98 EVer~l~~~DgaiLvVdA~eG-v~~QT~~vl~~A~----~~~l~~IvvINKiDr~~a~~~~v~~ei~dlf~~l~--a~de 170 (624)
T Consensus 77 lW~~Yy~~~~~iIfVVDssD~~r~~eak~~L~~ll~~~~l~~~PlLilaNKqDl~~a~~~~ei~~~L~L~~~~~~~~~~~ 156 (184)
T smart00178 77 LWKDYFPEVNGIVYLVDAYDKERFAESKRELDALLSDEELATVPFLILGNKIDAPYAASEDELRYALGLTNTTGSKGKVG 156 (184)
T ss_pred HHHHHHCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHCCHHHHCCCCCCC
T ss_conf 99988216758999972686889999999999986467655970999997567778999999998819512326557667
Q ss_pred HCCHHHHHHHHHCCEECCCCCCCCCCCCHHHHHHHHCCC
Q ss_conf 104266887886591646742233486413555321024
Q gi|254780233|r 171 QLDFPILYGSGRFGWMSDSSDGSRDQGMVPLLNLIVDHV 209 (624)
Q Consensus 171 ~ld~Pv~~~Sa~~G~~~~~~~~~~~~gl~~Lld~Ii~~i 209 (624)
T Consensus 157 ~r~~~i~~~SA~tG-----------~Gl~egl~WLs~~i 184 (184)
T smart00178 157 VRPLEVFMCSVVRR-----------MGYGEGFKWLSQYI 184 (184)
T ss_pred CCCEEEEEEECCCC-----------CCHHHHHHHHHHHC
T ss_conf 76319997356079-----------78699999998409