RPSBLAST alignment for GI: 254780233 and conserved domain: cd04167
>gnl|CDD|133367 cd04167, Snu114p, Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs. Length = 213
Score = 119 bits (300), Expect = 2e-27
Identities = 67/217 (30%), Positives = 112/217 (51%), Gaps = 28/217 (12%)
Query: 20 RNIAIIAHVDHGKTTLVDELLKQS---GVFRDNQRVSERVMDCNDLEKERGITILAKVTS 76
RN+AI H+ HGKT+L+D L++Q+ + R D E+ERGI+I + S
Sbjct: 1 RNVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPIS 60
Query: 77 IVWNDVR-----INIVDTPGHADFGGEVERILCMVESVVVLVDAAEGPMPQTKFVVGKAL 131
+V D + NI+DTPGH +F EV L + + VV++VD EG T+ ++ A+
Sbjct: 61 LVLPDSKGKSYLFNIIDTPGHVNFMDEVAAALRLSDGVVLVVDVVEGVTSNTERLIRHAI 120
Query: 132 KIGLRPIVVVNKVDR---------SDA--RADEVINEVFDLFSALDATDAQLDFP----I 176
GL ++V+NK+DR +DA + +I+EV ++ ++ T + L P +
Sbjct: 121 LEGLPIVLVINKIDRLILELKLPPNDAYFKLRHIIDEVNNIIASFSTTLSFLFSPENGNV 180
Query: 177 LYGSGRFGWM-SDSSDGSRDQGMVPLLNLIVDHVPPP 212
+ S +FG+ + S L++ IV ++P P
Sbjct: 181 CFASSKFGFCFTLESFAK----KYGLVDSIVSNIPSP 213