HHsearch alignment for GI: 254780234 and conserved domain: COG2117
>COG2117 Predicted subunit of tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain [Translation, ribosomal structure and biogenesis].
Probab=98.26 E-value=5.8e-06 Score=63.10 Aligned_cols=129 Identities=28% Similarity=0.352 Sum_probs=93.3
Q ss_pred EEEEEECCCHHHHHHHHHHHHHCCCEEEEEEEECCCCCHHHHHHHHHHHCCCEEEEEECHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 89999147725999999998718986999994578711068999999973980799820089999987999973686547
Q gi|254780234|r 7 KVVLAYSGGLDTSIILKWLQVEKGLEVIVFIADLGQGEELKIASDKARLLGAKEVYVKDLRREFVRDFVFPMFRANALYE 86 (404)
Q Consensus 7 kVvlaySGGLDTSv~i~~L~~e~g~eVi~~~~d~Gq~~d~~~~~~~A~~~Ga~~~~v~D~r~ef~~~~i~~~I~ana~Ye 86 (404)
T Consensus 2 ~v~vLfSGGKDSSLa-A~iL~klgyev~LVTvnFGv~d~~k~A~~tA~~lgF-~h~vl~Ldr~ile~A~em~i------e 73 (198)
T COG2117 2 DVYVLFSGGKDSSLA-ALILDKLGYEVELVTVNFGVLDSWKYARETAAILGF-PHEVLQLDREILEDAVEMII------E 73 (198)
T ss_pred CEEEEECCCCCHHHH-HHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHHCC-CCCEECCCHHHHHHHHHHHH------H
T ss_conf 568984489710589-999987178717999873346640668999998299-70000168899999999998------5
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHCCCCEEECHHHCCCCHHHHHHH--HHHHHC--CCCEEEEEEC
Q ss_conf 8742013012433599999998856892875001116821567999--999858--7970774410
Q gi|254780234|r 87 GYYLLGTAIARPLIAKYLVDIANETGADAIAHGSTGKGNDQVRFEL--SAYSLN--SDIEIIAPWR 148 (404)
Q Consensus 87 g~Ypl~tslaRplia~~lv~~a~~~ga~~iaHG~TgkGNDQvRFe~--~~~~l~--P~l~viaP~R 148 (404)
T Consensus 74 dg~P~~aI---q~iH~~alE~~A~r~~~~iaDG-T-RRDDrvP~ls~~~~qSLEdR~nv~Yi~PL~ 134 (198)
T COG2117 74 DGYPRNAI---QYIHEMALEALASREVDRIADG-T-RRDDRVPKLSRSEAQSLEDRLNVQYIRPLL 134 (198)
T ss_pred CCCCCHHH---HHHHHHHHHHHHHHHHHHHCCC-C-CCCCCCCCCCHHHHHHHHHHCCCEEECCCC
T ss_conf 38985088---9999999999987778887578-7-445667642498875188751864553033