HHsearch alignment for GI: 254780234 and conserved domain: PRK00143
>PRK00143 trmU tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase; Reviewed.
Probab=99.76 E-value=1.9e-17 Score=145.56 Aligned_cols=158 Identities=28% Similarity=0.385 Sum_probs=114.7
Q ss_pred CCCEEEEEECCCHHHHHHHHHHHHHCCCEEEEEEEECCC----------CCHHHHHHHHHHHCCCEEEEEECHHHHHHHH
Q ss_conf 777899991477259999999987189869999945787----------1106899999997398079982008999998
Q gi|254780234|r 4 DVKKVVLAYSGGLDTSIILKWLQVEKGLEVIVFIADLGQ----------GEELKIASDKARLLGAKEVYVKDLRREFVRD 73 (404)
Q Consensus 4 ~~kkVvlaySGGLDTSv~i~~L~~e~g~eVi~~~~d~Gq----------~~d~~~~~~~A~~~Ga~~~~v~D~r~ef~~~ 73 (404)
T Consensus 3 sk~rV~VamSGGVDSsVaA~LL~-~~Gy~V~Gv~m~~w~~~~~~~~C~~~~d~~dA~~va~~LgI-p~~v~d~~~~f~~~ 80 (355)
T PRK00143 3 SKKRVVVGMSGGVDSSVAAALLK-EQGYDVIGLFMKLWDDDDGSGGCCAEEDIADARAVADKLGI-PLYVVDFAKEFWDN 80 (355)
T ss_pred CCCEEEEEECCCHHHHHHHHHHH-HCCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHCCC-CEEEECHHHHHHHH
T ss_conf 88889999167899999999999-77995899999887688777899857889999999998698-57996869987678
Q ss_pred HHHHHHHCCCCCCCCCCCCCC-HHHHHHHHHHHHHHHHCCCCEEECHHHC----------------CCCHHHHHH--HHH
Q ss_conf 799997368654787420130-1243359999999885689287500111----------------682156799--999
Q gi|254780234|r 74 FVFPMFRANALYEGYYLLGTA-IARPLIAKYLVDIANETGADAIAHGSTG----------------KGNDQVRFE--LSA 134 (404)
Q Consensus 74 ~i~~~I~ana~Yeg~Ypl~ts-laRplia~~lv~~a~~~ga~~iaHG~Tg----------------kGNDQvRFe--~~~ 134 (404)
T Consensus 81 Vi~~f~~~--Y~~G~TPNPcv~CN~~IKFg~l~~~A~~lgad~iATGHYAri~~~~~~~~L~r~~D~~KDQSYfL~~l~~ 158 (355)
T PRK00143 81 VFDYFLDE--YKAGRTPNPCVLCNKEIKFKAFLDYALELGADYIATGHYARIRDEDGRYELLRAVDPNKDQSYFLYQLTQ 158 (355)
T ss_pred HHHHHHHH--HHCCCCCCCCHHCCCCCCHHHHHHHHHHCCCCEECCCCEEEEEECCCEEEEEECCCCCCCCEEEEECCCH
T ss_conf 89999999--9769999973340872339999999987399842335259999159818998678898872057610579
Q ss_pred HHHCCCCEEEEEECCCCCCCHHHHHHHHHHHCCCCCC
Q ss_conf 9858797077441006876379999999970896756
Q gi|254780234|r 135 YSLNSDIEIIAPWRHWSFKGRQDLIDFAEKHAIPIDK 171 (404)
Q Consensus 135 ~~l~P~l~viaP~Rd~~~~sRe~~i~ya~~~gIpv~~ 171 (404)
T Consensus 159 ~~L---~~~~FPLG--~~-~K~eVR~iA~~~gL~~a~ 189 (355)
T PRK00143 159 EQL---AKLLFPLG--EL-TKPEVREIAAEIGLPTAK 189 (355)
T ss_pred HHH---HHEECCCC--CC-CHHHHHHHHHHCCCCCCC
T ss_conf 887---42075876--77-358999999975898899