HHsearch alignment for GI: 254780234 and conserved domain: TIGR00032

>TIGR00032 argG argininosuccinate synthase; InterPro: IPR001518 Argininosuccinate synthase (6.3.4.5 from EC) (AS) is a urea cycle enzyme that catalyzes the penultimate step in arginine biosynthesis: the ATP-dependent ligation of citrulline to aspartate to form argininosuccinate, AMP and pyrophosphate , . In humans, a defect in the AS gene causes citrullinemia, a genetic disease characterised by severe vomiting spells and mental retardation. AS is a homotetrameric enzyme of chains of about 400 amino-acid residues. An arginine seems to be important for the enzyme's catalytic mechanism. The sequences of AS from various prokaryotes, archaebacteria and eukaryotes show significant similarity.; GO: 0004055 argininosuccinate synthase activity, 0005524 ATP binding, 0006526 arginine biosynthetic process.
Probab=100.00  E-value=0  Score=1188.52  Aligned_cols=395  Identities=46%  Similarity=0.844  Sum_probs=383.4

Q ss_pred             EEEEEECCCHHHHHHHHHHHHHCCC-EEEEEEEECCCC--CHHHHHHHHHHHCCCEEEEEECHHHHHHHHHHHHHHHCCC
Q ss_conf             8999914772599999999871898-699999457871--1068999999973980799820089999987999973686
Q gi|254780234|r    7 KVVLAYSGGLDTSIILKWLQVEKGL-EVIVFIADLGQG--EELKIASDKARLLGAKEVYVKDLRREFVRDFVFPMFRANA   83 (404)
Q Consensus         7 kVvlaySGGLDTSv~i~~L~~e~g~-eVi~~~~d~Gq~--~d~~~~~~~A~~~Ga~~~~v~D~r~ef~~~~i~~~I~ana   83 (404)
T Consensus         1 KVvLAySGGLDTSv~l~wL~~kyG~~~Via~~~dvGQPDE~d~~~~~~kA~~~GA~~~~~iDak~eFv~dy~f~aiqanA   80 (420)
T TIGR00032         1 KVVLAYSGGLDTSVCLKWLEEKYGYEEVIAVTADVGQPDEEDIDAIEEKALKYGAEKHYTIDAKEEFVKDYLFAAIQANA   80 (420)
T ss_pred             CEEEEEECCHHHHHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEEECHHHHHHHHHHHHHHCCC
T ss_conf             96888607025999999988652898607999756799988888899998873671025772368899999888765066


Q ss_pred             CCCCC----CCCCCCHHHHHHHHHHHHHHHHCCCCEEECHHHCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCC----CH
Q ss_conf             54787----42013012433599999998856892875001116821567999999858797077441006876----37
Q gi|254780234|r   84 LYEGY----YLLGTAIARPLIAKYLVDIANETGADAIAHGSTGKGNDQVRFELSAYSLNSDIEIIAPWRHWSFK----GR  155 (404)
Q Consensus        84 ~Yeg~----Ypl~tslaRplia~~lv~~a~~~ga~~iaHG~TgkGNDQvRFe~~~~~l~P~l~viaP~Rd~~~~----sR  155 (404)
T Consensus        81 ~Ye~~GG~~Y~L~TaLaRPlIA~~lVe~Ak~~Ga~AvaHGCTGKGNDQ~RFe~~~~~~~p~LkviaP~R~~~~~e~lgGR  160 (420)
T TIGR00032        81 VYEGTGGLVYPLSTALARPLIAKKLVEVAKKEGAEAVAHGCTGKGNDQVRFERSIRALNPDLKVIAPWRDLNLTEELGGR  160 (420)
T ss_pred             EECCCCCEECCCCCCCHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCHHHHHHHHHHHCCCCEEECCCCCHHHHHHHCCC
T ss_conf             03178741034766114579999999998466954987076877741357658887526898587473464677640594


Q ss_pred             HHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCC-CCCCCHHHCCCCCCHHHCC-CCCEEEEEEEECCEEE
Q ss_conf             9999999970896756656788641572431154576324584-5768201001465812279-9963899999502478
Q gi|254780234|r  156 QDLIDFAEKHAIPIDKNKRGEAPFSIDTNLLHSSSEGRVLEDP-SQPAPEYVYKMIVSPEEAP-DTPTTIRIDFQRGDPI  233 (404)
Q Consensus       156 e~~i~ya~~~gIpv~~~~~~~~~yS~D~Nlwg~S~Egg~Ledp-~~~~pe~~~~~t~~p~~ap-~~pe~v~I~Fe~G~PV  233 (404)
T Consensus       161 ~e~~eYa~~~Gip~p~~~--~K~YSiD~Nl~grs~Ea~~LEdP~~~~Ppe~~y~~t~~p~~~~~d~PE~v~I~Fe~GvPV  238 (420)
T TIGR00032       161 EEEIEYAAQKGIPVPMTK--EKPYSIDENLWGRSIEAGILEDPSDTEPPEDIYELTKFPIEATPDEPEVVEIDFEKGVPV  238 (420)
T ss_pred             HHHHHHHHHCCCCCCCCC--CCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHCCHHHCCCCCCCEEEEEECCCCCE
T ss_conf             889999996688876546--777762366775555055357887888814578863073346799971688862378532


Q ss_pred             EEC--------CEECC-HHHHHHHHHHHHHHCCCCCEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHH
Q ss_conf             751--------62318-999999998886421637410007732021000111373789999999999865089999999
Q gi|254780234|r  234 AIN--------GQVMS-PEVLLEQLNQYGRCNGIGRIDIVENRFVGIKSRGVYETPGGTILLHAHRAIESISLDSGSAHL  304 (404)
Q Consensus       234 ain--------G~~~~-~~~li~~LN~igg~~GvGr~d~vEnr~vG~KsR~vYEaPga~iL~~Ahr~LE~~~l~~~~~~~  304 (404)
T Consensus       239 aLnytdnktskg~~~~~~veLi~~aNeiaG~HGvGR~D~iEdR~ig~KSRe~YE~Pg~~~L~~AH~~Le~L~l~~~~~~f  318 (420)
T TIGR00032       239 ALNYTDNKTSKGVSLEKPVELILKANEIAGKHGVGRIDIIEDRIIGLKSREIYEAPGATLLIKAHRDLEQLTLTRDVLRF  318 (420)
T ss_pred             EECCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEEECEECCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHH
T ss_conf             30155464437733063789999999851007886431533034313245401015799999999998611111899999


Q ss_pred             HH-HHHHHHHHHHHCCCCCCHHHHHH-HHHHHHHHCCCCEEEEEEEECCEEEEEEEE-CCCCCCCHHHCCCCCCCCCCCH
Q ss_conf             99-99999999875351469899999-999999723367399999906159998772-7831088322230157787888
Q gi|254780234|r  305 KD-DLMSRYASIVYQGFWFSPEREML-QALIDKSQEYVEGSITLKLYKGNVMVVGRE-SNKSLYSDKLVTFEDDLDAYNQ  381 (404)
Q Consensus       305 K~-~~~~~~a~lvy~G~wf~p~~~~l-~a~i~~~q~~VtG~V~l~L~kG~~~v~gr~-S~~sLy~~~~as~~~~~~~~~~  381 (404)
T Consensus       319 ~~s~~~~~y~~LiY~GlwfdPl~e~LR~a~i~~~Q~~VTG~VrVkL~kG~~~v~gR~~S~y~lY~~e~~s~~ke~~~fd~  398 (420)
T TIGR00032       319 KDSIVEEKYSELIYNGLWFDPLKEALRDAFIRKTQERVTGTVRVKLFKGNAIVIGRKTSPYSLYDEELVSFDKEDKEFDP  398 (420)
T ss_pred             HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCCEEEEECCCCCCCCCCHHHCCCCCCCCCCCH
T ss_conf             88641157899986201478078999999988877400755999998281799732578610031022123557555697


Q ss_pred             HHHHHHHHHCCHHHHHHHHCCC
Q ss_conf             7854788870334898884178
Q gi|254780234|r  382 SDSEGFIKLHALRLRTLARRNK  403 (404)
Q Consensus       382 ~da~GFi~i~~l~~~~~~~~~k  403 (404)
T Consensus       399 ~~~~Gf~~~~gL~~~~~~~~~~  420 (420)
T TIGR00032       399 KDAIGFIAIRGLQIKVYREKKK  420 (420)
T ss_pred             HHHHHHHHHHCCCHHHHHHHCC
T ss_conf             8999999982465234644319