HHsearch alignment for GI: 254780234 and conserved domain: TIGR00289
>TIGR00289 TIGR00289 conserved hypothetical protein TIGR00289; InterPro: IPR005237 This family of conserved hypothetical proteins has no known function. Homologous proteins related to MJ0570 of Methanococcus jannaschii include both the apparent orthologs in the family, the much longer protein YLR143W from Saccharomyces cerevisiae (Baker's yeast), and second homologous proteins from Archaeoglobus fulgidus and Pyrococcus horikoshii that appear to represent a second orthologous group..
Probab=97.85 E-value=0.00017 Score=52.57 Aligned_cols=110 Identities=25% Similarity=0.392 Sum_probs=80.4
Q ss_pred EEEEEECCCHHHHHHHHHHHHHCCCEEEEEEEECCC-CCH--------HHHHHHHHHHCCC--EEEEEECHHHHHHHHHH
Q ss_conf 899991477259999999987189869999945787-110--------6899999997398--07998200899999879
Q gi|254780234|r 7 KVVLAYSGGLDTSIILKWLQVEKGLEVIVFIADLGQ-GEE--------LKIASDKARLLGA--KEVYVKDLRREFVRDFV 75 (404)
Q Consensus 7 kVvlaySGGLDTSv~i~~L~~e~g~eVi~~~~d~Gq-~~d--------~~~~~~~A~~~Ga--~~~~v~D~r~ef~~~~i 75 (404)
T Consensus 2 kvAvLySGGKDS~~ALy~al-~eG~eV~-~LV~v~seN~eSyMfH~pN~Hl~~l~AEavGiPL~klyt~GeeEkEVedL- 78 (227)
T TIGR00289 2 KVAVLYSGGKDSILALYKAL-EEGFEVK-YLVGVISENEESYMFHVPNVHLTDLVAEAVGIPLIKLYTSGEEEKEVEDL- 78 (227)
T ss_pred EEEEEECCCHHHHHHHHHHH-HCCCCEE-EEEEEECCCCCCCEEECHHHHHHHHHHHHCCCCHHHHHCCCCCCCHHHHH-
T ss_conf 06898518713689999998-6288547-85100028898620534257899999976176625630278652117666-
Q ss_pred HHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEECHHHCCCCHHHHHHHHHHHHCCCCEEEEEE
Q ss_conf 999736865478742013012433599999998856892875001116821567999999858797077441
Q gi|254780234|r 76 FPMFRANALYEGYYLLGTAIARPLIAKYLVDIANETGADAIAHGSTGKGNDQVRFELSAYSLNSDIEIIAPW 147 (404)
Q Consensus 76 ~~~I~ana~Yeg~Ypl~tslaRplia~~lv~~a~~~ga~~iaHG~TgkGNDQvRFe~~~~~l~P~l~viaP~ 147 (404)
T Consensus 79 --------------------------ag~l~~lderGvea~~~Ga~~S~YQK~Rid~vCrelG--lks~APL 122 (227)
T TIGR00289 79 --------------------------AGQLEELDERGVEAVVIGAIESEYQKSRIDKVCRELG--LKSIAPL 122 (227)
T ss_pred --------------------------HHHHHHHHHCCCCEEEECCEECCHHHHHHHHHHHHHC--CHHCCCC
T ss_conf --------------------------2155445530545478853410112335778877714--1002760