HHsearch alignment for GI: 254780234 and conserved domain: TIGR02039

>TIGR02039 CysD sulfate adenylyltransferase, small subunit; InterPro: IPR011784 Metabolic assimilation of sulphur from inorganic sulphate, requires sulphate activation by coupling to a nucleoside, for the production of high-energy nucleoside phosphosulphates. This pathway appears to be similar in all prokaryotic organisms. Activation is first achieved through reaction of sulphate with ATP by sulphate adenylyltransferase (ATP sulphurylase) to produce 5'-phosphosulphate (APS), coupled by GTP hydrolysis. Subsequently, APS is phosphorylated by an APS kinase to produce 3'-phosphoadenosine-5'-phosphosulphate (PAPS). In Escherichia coli, ATP sulphurylase is a heterodimer composed of two subunits encoded by cysD and cysN, with APS kinase encoded by cysC. These genes are located in a unidirectionally transcribed gene cluster, and have been shown to be required for the synthesis of sulphur-containing amino acids. Homologous to this E. coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulphurase and APS kinase activity, yet are involved in Nod factor sulphation, and sulphation of other macromolecules.; GO: 0004781 sulfate adenylyltransferase (ATP) activity, 0019421 sulfate reduction APS pathway.
Probab=94.88  E-value=0.21  Score=30.34  Aligned_cols=241  Identities=19%  Similarity=0.223  Sum_probs=145.9

Q ss_pred             CCEEEEEECCCHHHHHHHHHHHHHC--C-CEEEEEEEECCCC-CHHHHHHHHH-HHCCCEEEEEECHHHHHHHHHHHHHH
Q ss_conf             7789999147725999999998718--9-8699999457871-1068999999-97398079982008999998799997
Q gi|254780234|r    5 VKKVVLAYSGGLDTSIILKWLQVEK--G-LEVIVFIADLGQG-EELKIASDKA-RLLGAKEVYVKDLRREFVRDFVFPMF   79 (404)
Q Consensus         5 ~kkVvlaySGGLDTSv~i~~L~~e~--g-~eVi~~~~d~Gq~-~d~~~~~~~A-~~~Ga~~~~v~D~r~ef~~~~i~~~I   79 (404)
T Consensus        19 F~~PV~LyS~GKDS~VlLHLA~KaF~Pg~~PFplLHvDTgw~f~E~~~fRD~~~~~~~~-~L~v~~~~~~-~~~g~~P~~   96 (295)
T TIGR02039        19 FERPVLLYSIGKDSSVLLHLARKAFYPGRLPFPLLHVDTGWKFREMIAFRDELVAKYGL-ELIVHSNEEG-IAEGINPFT   96 (295)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHCC-EEEEEECHHH-HHHCCCCCH
T ss_conf             37976898657347999998764058888797357740663278999999999987097-6888505023-541566201


Q ss_pred             HCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEECHHHCCCCHHH---------------------HHHHHHHHHC
Q ss_conf             3686547874201301243359999999885689287500111682156---------------------7999999858
Q gi|254780234|r   80 RANALYEGYYLLGTAIARPLIAKYLVDIANETGADAIAHGSTGKGNDQV---------------------RFELSAYSLN  138 (404)
Q Consensus        80 ~ana~Yeg~Ypl~tslaRplia~~lv~~a~~~ga~~iaHG~TgkGNDQv---------------------RFe~~~~~l~  138 (404)
T Consensus        97 ~~~~~~~----------~~~~T~~L~~Al~~~~FDAa~gGAR-RdEE~sRaKERifS~R~~~h~WDPk~QRPEL-W~~YN  164 (295)
T TIGR02039        97 EGSALHT----------DIMKTEALRQALDKNQFDAAFGGAR-RDEEKSRAKERIFSFRDAFHQWDPKKQRPEL-WNLYN  164 (295)
T ss_pred             HHHHHHH----------HHHHHHHHHHHHHHCCCCEEECCCC-CHHHHCCCCCCEEHHCCCCCCCCCCCCCHHH-HHHCC
T ss_conf             0124555----------5563189999987338865631663-1344301201000100345788851257377-87505


Q ss_pred             CCCEEEEEECCC---CCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCHHHCCCCCCHHH
Q ss_conf             797077441006---87637999999997089675665678864157243115457632458457682010014658122
Q gi|254780234|r  139 SDIEIIAPWRHW---SFKGRQDLIDFAEKHAIPIDKNKRGEAPFSIDTNLLHSSSEGRVLEDPSQPAPEYVYKMIVSPEE  215 (404)
Q Consensus       139 P~l~viaP~Rd~---~~~sRe~~i~ya~~~gIpv~~~~~~~~~yS~D~Nlwg~S~Egg~Ledp~~~~pe~~~~~t~~p~~  215 (404)
T Consensus       165 g~~~~GE~~RvFPLSNwT-E~DiW~Y~~~~~i~~~~l-----YfA~~RpV~~R~g~l~~~~D~~~~~~------------  226 (295)
T TIGR02039       165 GRISKGESVRVFPLSNWT-ELDIWRYIAAENIEIVPL-----YFAAKRPVVERDGMLIMVDDERLELE------------  226 (295)
T ss_pred             CCCCCCCEEEEECCCCCC-HHHHHHHHHHCCCCCCEE-----ECCCCCCEEECCCEEEEECCCCCCCC------------
T ss_conf             234688726872266650-445898874346542201-----10246862410744888606524667------------


Q ss_pred             CCCCCEEEEEEEECCEEEEECC----EECCHHHHHHHHH-HHHHHCCCCC-EECCCCCCCCCCCCCCC
Q ss_conf             7999638999995024787516----2318999999998-8864216374-10007732021000111
Q gi|254780234|r  216 APDTPTTIRIDFQRGDPIAING----QVMSPEVLLEQLN-QYGRCNGIGR-IDIVENRFVGIKSRGVY  277 (404)
Q Consensus       216 ap~~pe~v~I~Fe~G~PVainG----~~~~~~~li~~LN-~igg~~GvGr-~d~vEnr~vG~KsR~vY  277 (404)
T Consensus       227 ~~E~~~~~~vrfRTlGc~~~tga~~S~A~~~~~ii~E~~~~~~sERg~~R~~D~~~~~~ME~kKR~GY  294 (295)
T TIGR02039       227 PGEVVKERMVRFRTLGCYPLTGAIESDAATVEEIIAEVAVARTSERGQGRAIDRDQEASMEKKKREGY  294 (295)
T ss_pred             CCCCCCCEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHCCCCC
T ss_conf             77510000455554057564543122341079999998875320254523324412000233003679