HHsearch alignment for GI: 254780234 and conserved domain: TIGR03104
>TIGR03104 trio_amidotrans asparagine synthase family amidotransferase. Members of this protein family are closely related to several isoforms of asparagine synthetase (glutamine amidotransferase) and typically have been given this name in genome annotation to date. Each is part of a conserved three-gene cassette sparsely distributed across at least twenty different species known so far, including alpha, beta, and gamma Proteobacteria, Mycobacterium, and Prosthecochloris, which is a member of the Chlorobi. The other two members of the cassette are a probable protease and a member of the GNAT family of acetyltransferases.
Probab=97.65 E-value=0.00065 Score=48.40 Aligned_cols=108 Identities=20% Similarity=0.246 Sum_probs=69.2
Q ss_pred EEEEEECCCHHHHHHHHHHHHHCCCEEEEEEEEC---CC--CCHHHHHHHHHHHCCCEEEEEECHH-HHHHHHHHHHHHH
Q ss_conf 8999914772599999999871898699999457---87--1106899999997398079982008-9999987999973
Q gi|254780234|r 7 KVVLAYSGGLDTSIILKWLQVEKGLEVIVFIADL---GQ--GEELKIASDKARLLGAKEVYVKDLR-REFVRDFVFPMFR 80 (404)
Q Consensus 7 kVvlaySGGLDTSv~i~~L~~e~g~eVi~~~~d~---Gq--~~d~~~~~~~A~~~Ga~~~~v~D~r-~ef~~~~i~~~I~ 80 (404)
T Consensus 262 pvg~~LSGGlDSS~i~a~~~~~~~~~i~tfs~~f~~~~~~~~dE~~~a~~va~~~~~~-h~~~~~~~~~~~-~~l~~~~~ 339 (589)
T TIGR03104 262 PVGVLLSGGLDSSLIVGLLAEAGVDGLRTFSIGFEDVGGEKGDEFEYSDIIAERFHTR-HHKIRIPNHRVL-PALPEAVA 339 (589)
T ss_pred CCCEECCCCCCHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHCCC-CEEEEECCHHHH-HHHHHHHH
T ss_conf 6300017875438999999995699985278872468877666799999999973878-579995717899-98899885
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHH-HHHHHHHCCCCEEECHHHCCCCHHH
Q ss_conf 68654787420130124335999-9999885689287500111682156
Q gi|254780234|r 81 ANALYEGYYLLGTAIARPLIAKY-LVDIANETGADAIAHGSTGKGNDQV 128 (404)
Q Consensus 81 ana~Yeg~Ypl~tslaRplia~~-lv~~a~~~ga~~iaHG~TgkGNDQv 128 (404)
T Consensus 340 ~~---d--eP~~~~---~~~~~~~l~~~~~~-~~kV~Ls---G~GaDEl 376 (589)
T TIGR03104 340 AM---S--EPMVSH---DCVAFYLLSEEVSK-HVKVVQS---GQGADEV 376 (589)
T ss_pred CC---C--CCCCCC---HHHHHHHHHHHHCC-CCEEEEE---EECCCCC
T ss_conf 26---8--987683---06889999987328-8369995---2033323