HHsearch alignment for GI: 254780234 and conserved domain: cd01998
>cd01998 tRNA_Me_trans tRNA methyl transferase. This family represents tRNA(5-methylaminomethyl-2-thiouridine)-methyltransferase which is involved in the biosynthesis of the modified nucleoside 5-methylaminomethyl-2-thiouridine present in the wobble position of some tRNAs. This family of enzyme only presents in bacteria and eukaryote. The archaeal counterpart of this enzyme performs same function, but is completely unrelated in sequence.
Probab=99.71 E-value=2.9e-16 Score=137.04 Aligned_cols=162 Identities=28% Similarity=0.387 Sum_probs=115.2
Q ss_pred EEEEEECCCHHHHHHHHHHHHHCCCEEEEEEEECCC----------CCHHHHHHHHHHHCCCEEEEEECHHHHHHHHHHH
Q ss_conf 899991477259999999987189869999945787----------1106899999997398079982008999998799
Q gi|254780234|r 7 KVVLAYSGGLDTSIILKWLQVEKGLEVIVFIADLGQ----------GEELKIASDKARLLGAKEVYVKDLRREFVRDFVF 76 (404)
Q Consensus 7 kVvlaySGGLDTSv~i~~L~~e~g~eVi~~~~d~Gq----------~~d~~~~~~~A~~~Ga~~~~v~D~r~ef~~~~i~ 76 (404)
T Consensus 1 kV~v~mSGGVDSsvaA~LL~-~~G~~V~gv~m~~w~~~~~~~~C~~~~d~~dA~~va~~LgI-p~~v~d~~~ef~~~V~~ 78 (349)
T cd01998 1 KVVVAMSGGVDSSVAAALLK-EQGYEVIGVFMKNWDEDDGKGGCCSEEDLKDARRVADQLGI-PHYVVNFEKEYWEKVFE 78 (349)
T ss_pred CEEEECCCCHHHHHHHHHHH-HCCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHCCC-CEEEECHHHHHHHHHHH
T ss_conf 98999077899999999998-77995799999967887667898867789999999998699-67996809988688899
Q ss_pred HHHHCCCCCCCCCCCCCC-HHHHHHHHHHHHHHHHCCCCEEECHHHC-------------CC----CHHHHHHHHHHHHC
Q ss_conf 997368654787420130-1243359999999885689287500111-------------68----21567999999858
Q gi|254780234|r 77 PMFRANALYEGYYLLGTA-IARPLIAKYLVDIANETGADAIAHGSTG-------------KG----NDQVRFELSAYSLN 138 (404)
Q Consensus 77 ~~I~ana~Yeg~Ypl~ts-laRplia~~lv~~a~~~ga~~iaHG~Tg-------------kG----NDQvRFe~~~~~l~ 138 (404)
T Consensus 79 ~f~~~Y--~~G~TPNPcv~CN~~IKF~~l~~~A~~~g~d~iATGHYAri~~~~~~~~~L~r~~D~~KDQSYfL---~~l~ 153 (349)
T cd01998 79 PFLEEY--KKGRTPNPDILCNKEIKFGALLDYAKKLGADYIATGHYARIEEDNNGRYRLLRGVDPNKDQSYFL---SQLS 153 (349)
T ss_pred HHHHHH--HCCCCCCCCHHCCCEEEHHHHHHHHHHCCCCEECCCCEEEEEECCCCCEEEEECCCCCCCCCEEE---ECCC
T ss_conf 999999--74899987621187351999999998759986413514788975898489987689987820564---0124
Q ss_pred CC--CEEEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCH
Q ss_conf 79--7077441006876379999999970896756656788641572
Q gi|254780234|r 139 SD--IEIIAPWRHWSFKGRQDLIDFAEKHAIPIDKNKRGEAPFSIDT 183 (404)
Q Consensus 139 P~--l~viaP~Rd~~~~sRe~~i~ya~~~gIpv~~~~~~~~~yS~D~ 183 (404)
T Consensus 154 ~~~L~~~~FPLG--~~-~K~eVR~iA~~~gl~~a-~----K~dSq~I 192 (349)
T cd01998 154 QEQLSRLIFPLG--DL-TKPEVREIAKELGLPVA-K----KKDSQGI 192 (349)
T ss_pred HHHHHHEECCCC--CC-CHHHHHHHHHHCCCCCC-C----CCCCCCE
T ss_conf 876610387887--86-53899999998599989-9----7777760