HHsearch alignment for GI: 254780234 and conserved domain: cd05564

>cd05564 PTS_IIB_chitobiose_lichenan PTS_IIB_chitobiose_lichenan: subunit IIB of enzyme II (EII) of the N,N-diacetylchitobiose-specific and lichenan-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In these systems, EII is either a lichenan- or an N,N-diacetylchitobiose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. In the chitobiose system, these subunits are expressed as separate proteins from chbA, chbB, and chbC of the chb operon (formerly the cel (cellulose) operon). In the lichenan system, these subunits are expressed from licA, licB, and licC of the lic operon. The lic operon of Bacillus subtilis is required for the transport and degradation of oligomeric beta-glucosides, which are produced by extracellular enzymes on substrates such as lichenan or barley glucan. The lic operon is transcribed from a gammaA-dependent promoter and is inducible by lichenan, lichenan hydrolysate, and cellobiose. The IIB d
Probab=90.29  E-value=0.94  Score=25.70  Aligned_cols=60  Identities=32%  Similarity=0.402  Sum_probs=36.1

Q ss_pred             EEEEEECCCHHHHHHHHHHHH---HCCC--EEEEEEEEC-------------C-CC-CHHHHHHHHHHHCCCEEEEEECH
Q ss_conf             899991477259999999987---1898--699999457-------------8-71-10689999999739807998200
Q gi|254780234|r    7 KVVLAYSGGLDTSIILKWLQV---EKGL--EVIVFIADL-------------G-QG-EELKIASDKARLLGAKEVYVKDL   66 (404)
Q Consensus         7 kVvlaySGGLDTSv~i~~L~~---e~g~--eVi~~~~d~-------------G-q~-~d~~~~~~~A~~~Ga~~~~v~D~   66 (404)
T Consensus         1 kIlL~C~~GmSts~l~~km~~~a~~~~~~~~i~A~~~~~~~~~~~~~DviLl~PQv~y~~~~i~~~~~~~~i-pV~vI~~   79 (96)
T cd05564           1 KILLVCSAGMSTSILVKKMKKAAEKRGIDAEIEAVPESELEEYIDDADVVLLGPQVRYMLDEVKKKAAEYGI-PVAVIDM   79 (96)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEEEEHHHHHHHHHCCCEEEECCHHHHHHHHHHHHHHHCCC-CEEEECH
T ss_conf             989995998659999999999999749977999964899997741599999772799999999998610499-2796073


Q ss_pred             H
Q ss_conf             8
Q gi|254780234|r   67 R   67 (404)
Q Consensus        67 r   67 (404)
T Consensus        80 ~   80 (96)
T cd05564          80 M   80 (96)
T ss_pred             H
T ss_conf             5