HHsearch alignment for GI: 254780234 and conserved domain: pfam03054
>pfam03054 tRNA_Me_trans tRNA methyl transferase. This family represents tRNA(5-methylaminomethyl-2-thiouridine)-methyltransferase which is involved in the biosynthesis of the modified nucleoside 5-methylaminomethyl-2-thiouridine present in the wobble position of some tRNAs.
Probab=99.70 E-value=3.7e-16 Score=136.24 Aligned_cols=155 Identities=28% Similarity=0.407 Sum_probs=112.2
Q ss_pred EEEEEECCCHHHHHHHHHHHHHCCCEEEEEEEECCC-----------CCHHHHHHHHHHHCCCEEEEEECHHHHHHHHHH
Q ss_conf 899991477259999999987189869999945787-----------110689999999739807998200899999879
Q gi|254780234|r 7 KVVLAYSGGLDTSIILKWLQVEKGLEVIVFIADLGQ-----------GEELKIASDKARLLGAKEVYVKDLRREFVRDFV 75 (404)
Q Consensus 7 kVvlaySGGLDTSv~i~~L~~e~g~eVi~~~~d~Gq-----------~~d~~~~~~~A~~~Ga~~~~v~D~r~ef~~~~i 75 (404)
T Consensus 2 kV~VamSGGVDSsVaA~LL~-~~Gy~V~Gv~m~~w~~~~~~~~~C~~~~d~~dA~~va~~LgI-p~~v~d~~~~f~~~Vi 79 (354)
T pfam03054 2 KVVVAMSGGVDSSVAAYLLK-EQGYEVIGVFMKNWDEEDEFGHGCCSEEDLADAQRVCEQLGI-PLYVVNFEKEYWEKVF 79 (354)
T ss_pred EEEEEECCCHHHHHHHHHHH-HCCCCEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHCCC-CEEEECHHHHHHHHHH
T ss_conf 69999047899999999999-779963999999566887667889988999999999998699-7899787998758999
Q ss_pred HHHHHCCCCCCCCCCCCCC-HHHHHHHHHHHHHHHH-CCCCEEECHH---HC-------------CCCHHHHHHHHHHHH
Q ss_conf 9997368654787420130-1243359999999885-6892875001---11-------------682156799999985
Q gi|254780234|r 76 FPMFRANALYEGYYLLGTA-IARPLIAKYLVDIANE-TGADAIAHGS---TG-------------KGNDQVRFELSAYSL 137 (404)
Q Consensus 76 ~~~I~ana~Yeg~Ypl~ts-laRplia~~lv~~a~~-~ga~~iaHG~---Tg-------------kGNDQvRFe~~~~~l 137 (404)
T Consensus 80 ~~fv~~--Y~~G~TPNPcv~CN~~IKFg~l~~~A~~~lGad~iATGHYAri~~~~~~~~L~r~~D~~KDQSYf---L~~l 154 (354)
T pfam03054 80 EPFLDE--YKNGRTPNPDILCNREIKFGALLDYAKQVLGADYLATGHYARVSLNENESELLRGKDKNKDQSYF---LSGL 154 (354)
T ss_pred HHHHHH--HHCCCCCCCCHHHCCCCCHHHHHHHHHHHCCCCCCCCCCEEEEEECCCEEEEEECCCCCCCCCEE---EECC
T ss_conf 999999--97699998414418964389999999986699810447428999049938999899999980178---6107
Q ss_pred CCC--CEEEEEECCCCCCCHHHHHHHHHHHCCCCCC
Q ss_conf 879--7077441006876379999999970896756
Q gi|254780234|r 138 NSD--IEIIAPWRHWSFKGRQDLIDFAEKHAIPIDK 171 (404)
Q Consensus 138 ~P~--l~viaP~Rd~~~~sRe~~i~ya~~~gIpv~~ 171 (404)
T Consensus 155 ~q~~L~~~lFPLG~--~-~K~eVR~iA~~~gL~~a~ 187 (354)
T pfam03054 155 SQEQLEKLLFPLGD--L-TKEEVRKIAKEAGLPTAK 187 (354)
T ss_pred CHHHHHHEECCCCC--C-CHHHHHHHHHHCCCCCCC
T ss_conf 89876431828768--8-528999999976998899