HHsearch results for GI: 254780234 and protein with PDBid: 2c5s_A

>2c5s_A THII, probable thiamine biosynthesis protein THII; RNA-binding protein, RNA binding protein, tRNA modification, 4-thiouridine synthase; HET: AMP; 2.5A {Bacillus anthracis} SCOP: c.26.2.6 d.308.1.1
Probab=99.24  E-value=3.2e-11  Score=99.31  Aligned_cols=149  Identities=17%  Similarity=0.190  Sum_probs=104.7

Q ss_pred             CEEEEEECCCHHHHHHHHHHHHHCCCEEEEEEEECCCC---CHHHHHHHHHHHCCC----EEEEEECHHHHHHHHHHHHH
Q ss_conf             78999914772599999999871898699999457871---106899999997398----07998200899999879999
Q gi|254780234|r    6 KKVVLAYSGGLDTSIILKWLQVEKGLEVIVFIADLGQG---EELKIASDKARLLGA----KEVYVKDLRREFVRDFVFPM   78 (404)
Q Consensus         6 kkVvlaySGGLDTSv~i~~L~~e~g~eVi~~~~d~Gq~---~d~~~~~~~A~~~Ga----~~~~v~D~r~ef~~~~i~~~   78 (404)
                      .||++++|||+||+|++.++. +.|++|++++.+.|+.   ++.+.+++-|..++.    .+.++++..+.+ +... . 
T Consensus       188 gKvlvllSGGiDS~Vaa~ll~-k~G~~v~~v~~~~~~~~~~~~~e~v~~la~~l~~~~~~i~~~~~~~~~~~-~~~~-~-  263 (413)
T 2c5s_A          188 GKVMVLLSGGIDSPVAAYLTM-KRGVSVEAVHFHSPPFTSERAKQKVIDLAQELTKYCKRVTLHLVPFTEVQ-KTIN-K-  263 (413)
T ss_dssp             EEEEEECCSSSHHHHHHHHHH-HBTEEEEEEEEECTTTSCHHHHHHHHHHHHHHGGGSSCEEEEEEECHHHH-HHHH-H-
T ss_pred             CCEEEEEECCCCHHHHHHHHH-HHCCCEEEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEEEEEHHHHHH-HHHH-H-
T ss_conf             838999966960899999999-82886368997569989978999999999981897211244662277888-8777-5-


Q ss_pred             HHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEECHHH-CCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCHHH
Q ss_conf             7368654787420130124335999999988568928750011-168215679999998587970774410068763799
Q gi|254780234|r   79 FRANALYEGYYLLGTAIARPLIAKYLVDIANETGADAIAHGST-GKGNDQVRFELSAYSLNSDIEIIAPWRHWSFKGRQD  157 (404)
Q Consensus        79 I~ana~Yeg~Ypl~tslaRplia~~lv~~a~~~ga~~iaHG~T-gkGNDQvRFe~~~~~l~P~l~viaP~Rd~~~~sRe~  157 (404)
                         +.    ..+..+.+.|-+..+.+.++|++.||++|+.|-. +--.+|.-..+....-.-++.|+.|..  .+ ..+|
T Consensus       264 ---~~----~~~~~~~~~rr~~~~~a~~~A~~~g~~~I~tG~~~~d~~sq~l~nl~~~~~~~~~~iiRPL~--~~-dK~E  333 (413)
T 2c5s_A          264 ---EI----PSSYSMTVMRRMMMRITERIAEERNALAITTGESLGQVASQTLDSMHTINEVTNYPVIRPLI--TM-DKLE  333 (413)
T ss_dssp             ---HS----CGGGHHHHHHHHHHHHHHHHHHHTTCCEEECCCCSSSTTSCCHHHHHHHGGGCCSCEECTTT--TC-CHHH
T ss_pred             ---HC----CCCCCCHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHCCCCCCCCCCCCCC--CC-CHHH
T ss_conf             ---44----68883226899999999999985578899987726866026788876514222676414001--69-9999


Q ss_pred             HHHHHHHHCCC
Q ss_conf             99999970896
Q gi|254780234|r  158 LIDFAEKHAIP  168 (404)
Q Consensus       158 ~i~ya~~~gIp  168 (404)
                      -+++|++.|++
T Consensus       334 I~~~Ak~iGl~  344 (413)
T 2c5s_A          334 IIKIAEEIGTY  344 (413)
T ss_dssp             HHHHHHHTTCH
T ss_pred             HHHHHHHCCCC
T ss_conf             99999984991