Query gi|254780235|ref|YP_003064648.1| hypothetical protein CLIBASIA_00600 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 74
No_of_seqs 1 out of 3
Neff 1.0
Searched_HMMs 33803
Date Mon May 23 22:20:25 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780235.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 >2inp_E Phenol hydroxylase com 25.6 21 0.00061 17.1 0.4 13 24-36 24-36 (118)
2 >1fjk_A Cardiac phospholamban; 19.5 70 0.0021 14.3 3.0 23 38-60 28-51 (52)
3 >2uy1_A Cleavage stimulation f 12.2 77 0.0023 14.1 0.8 13 35-47 38-50 (65)
4 >2nlv_A XISI protein-like; YP_ 11.0 1E+02 0.0031 13.4 1.2 10 25-34 45-54 (112)
5 >1uw4_B UPF2, regulator of non 10.3 1.3E+02 0.0038 12.9 1.9 14 47-60 35-48 (131)
6 >3d7q_A XISI protein-like; ZP_ 9.8 1.2E+02 0.0036 13.0 1.2 10 25-34 45-54 (112)
7 >2nwv_A XISI protein-like; YP_ 9.4 1.3E+02 0.0038 12.9 1.2 10 25-34 47-56 (114)
8 >2nvm_A FDXN element excision 8.8 1.4E+02 0.0041 12.7 1.2 10 25-34 59-68 (126)
9 >1t9k_A Probable methylthiorib 8.1 1.6E+02 0.0048 12.4 1.8 13 27-39 10-22 (113)
10 >1acc_A PA, anthrax protective 7.1 1.1E+02 0.0033 13.2 0.0 16 8-23 58-73 (128)
No 1
>>2inp_E Phenol hydroxylase component PHO; DIIRON, four-helix bundle, regulatory protein, oxidoreductase; 2.30A {Pseudomonas stutzeri} PDB: 2inn_E (E:)
Probab=25.64 E-value=21 Score=17.10 Aligned_cols=13 Identities=23% Similarity=0.715 Sum_probs=10.8
Q ss_pred EEEEEECCCCEEE
Q ss_conf 0475523871777
Q gi|254780235|r 24 DMYLGWDNNSMFI 36 (74)
Q Consensus 24 dmylgwdnnsmfi 36 (74)
-.|+|||.+-||-
T Consensus 24 LlyigWd~HllFc 36 (118)
T 2inp_E 24 LLYVYWPDHLLFC 36 (118)
T ss_dssp EEEEECTTCTTSC
T ss_pred EEEEEECCCHHHH
T ss_conf 7995213003320
No 2
>>1fjk_A Cardiac phospholamban; helix, membrane protein; NMR {Sus scrofa} (A:)
Probab=19.51 E-value=70 Score=14.30 Aligned_cols=23 Identities=43% Similarity=0.638 Sum_probs=15.3
Q ss_pred EHHHHHHHHHHHHHHHH-HHHHHH
Q ss_conf 06799999999999999-996478
Q gi|254780235|r 38 KQEFFIFMMEKLVCLLL-CVCGML 60 (74)
Q Consensus 38 kqeffifmmeklvclll-cvcgml 60 (74)
-||.|+-.---|.|||| |.--||
T Consensus 28 lqelfvnfclili~llliciivml 51 (52)
T 1fjk_A 28 LQNLFINFCLILIFLLLICIIVML 51 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 999999999999999999999996
No 3
>>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B (A:317-381)
Probab=12.23 E-value=77 Score=14.07 Aligned_cols=13 Identities=46% Similarity=1.099 Sum_probs=9.8
Q ss_pred EEEEHHHHHHHHH
Q ss_conf 7760679999999
Q gi|254780235|r 35 FILKQEFFIFMME 47 (74)
Q Consensus 35 filkqeffifmme 47 (74)
-.||.|||.|...
T Consensus 38 tllkeefflfllr 50 (65)
T 2uy1_A 38 TLLKEEFFLFLLR 50 (65)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
T ss_conf 7999999999986
No 4
>>2nlv_A XISI protein-like; YP_324325.1, structural genomics, PSI-2, protein structure initiative, joint center for structural genomics; HET: MSE; 1.30A {Anabaena variabilis atcc 29413} (A:)
Probab=10.98 E-value=1e+02 Score=13.39 Aligned_cols=10 Identities=20% Similarity=0.624 Sum_probs=7.3
Q ss_pred EEEEECCCCE
Q ss_conf 4755238717
Q gi|254780235|r 25 MYLGWDNNSM 34 (74)
Q Consensus 25 mylgwdnnsm 34 (74)
|.+||+|+..
T Consensus 45 ~~vGW~~~~R 54 (112)
T 2nlv_A 45 XNVGWQGLNR 54 (112)
T ss_dssp EEEEEETTEE
T ss_pred EEECCCCCEE
T ss_conf 9902458838
No 5
>>1uw4_B UPF2, regulator of nonsense transcripts 2; nonsense mediated mRNA decay protein, RNA-binding protein, NMD, RNP domain, MIF4G domain; 1.95A {Homo sapiens} (B:118-248)
Probab=10.32 E-value=1.3e+02 Score=12.90 Aligned_cols=14 Identities=43% Similarity=0.911 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHH
Q ss_conf 99999999996478
Q gi|254780235|r 47 EKLVCLLLCVCGML 60 (74)
Q Consensus 47 eklvclllcvcgml 60 (74)
-+|||.||-.||.-
T Consensus 35 IrLvctLL~tcg~~ 48 (131)
T 1uw4_B 35 IRLVCTILDTCGQY 48 (131)
T ss_dssp HHHHHHHHHHHGGG
T ss_pred HHHHHHHHHHHHHH
T ss_conf 99999999999898
No 6
>>3d7q_A XISI protein-like; ZP_00106052.1, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 2.30A {Nostoc punctiforme pcc 73102} (A:)
Probab=9.81 E-value=1.2e+02 Score=13.04 Aligned_cols=10 Identities=30% Similarity=0.933 Sum_probs=7.3
Q ss_pred EEEEECCCCE
Q ss_conf 4755238717
Q gi|254780235|r 25 MYLGWDNNSM 34 (74)
Q Consensus 25 mylgwdnnsm 34 (74)
|.+||+++..
T Consensus 45 ~~~GW~~~~R 54 (112)
T 3d7q_A 45 ISVGWNNQHR 54 (112)
T ss_dssp EEEEEETTEE
T ss_pred EECCCCCCEE
T ss_conf 9813568837
No 7
>>2nwv_A XISI protein-like; YP_323822.1, structural genomics, PSI-2, protein structure initiative, joint center for structural genomics, JCSG; 1.85A {Anabaena variabilis} (A:)
Probab=9.39 E-value=1.3e+02 Score=12.90 Aligned_cols=10 Identities=10% Similarity=0.577 Sum_probs=7.2
Q ss_pred EEEEECCCCE
Q ss_conf 4755238717
Q gi|254780235|r 25 MYLGWDNNSM 34 (74)
Q Consensus 25 mylgwdnnsm 34 (74)
|.+||+|+..
T Consensus 47 ~~~GW~~~~R 56 (114)
T 2nwv_A 47 LAVDWQGSKR 56 (114)
T ss_dssp EEEEEETTEE
T ss_pred EECCCCCCEE
T ss_conf 9814568817
No 8
>>2nvm_A FDXN element excision controlling factor XISI; YP_321976.1, structural genomics, PSI-2, protein structure initiative; 2.19A {Anabaena variabilis atcc 29413} (A:)
Probab=8.83 E-value=1.4e+02 Score=12.72 Aligned_cols=10 Identities=30% Similarity=0.863 Sum_probs=7.1
Q ss_pred EEEEECCCCE
Q ss_conf 4755238717
Q gi|254780235|r 25 MYLGWDNNSM 34 (74)
Q Consensus 25 mylgwdnnsm 34 (74)
|.+||+++.-
T Consensus 59 ~~vGW~~~~R 68 (126)
T 2nvm_A 59 LCCGWDGKKR 68 (126)
T ss_dssp EEEEEETTEE
T ss_pred EECCCCCCEE
T ss_conf 9813558827
No 9
>>1t9k_A Probable methylthioribose-1-phosphate isomerase; structural genomics, translation initiation factor, AIF-2B subunit, PSI; 2.60A {Thermotoga maritima} (A:1-113)
Probab=8.06 E-value=1.6e+02 Score=12.39 Aligned_cols=13 Identities=38% Similarity=0.764 Sum_probs=0.0
Q ss_pred EEECCCCEEEEEH
Q ss_conf 5523871777606
Q gi|254780235|r 27 LGWDNNSMFILKQ 39 (74)
Q Consensus 27 lgwdnnsmfilkq 39 (74)
+-|++++..||.|
T Consensus 10 i~~~~~~l~iLDQ 22 (113)
T 1t9k_A 10 XEWSGNSLKLLDQ 22 (113)
T ss_dssp EEECSSCEEEECT
T ss_pred EEEECCEEEEEEC
T ss_conf 9998999999877
No 10
>>1acc_A PA, anthrax protective antigen; toxin, calcium-binding; 2.10A {Bacillus anthracis} (A:608-735)
Probab=7.07 E-value=1.1e+02 Score=13.20 Aligned_cols=16 Identities=31% Similarity=0.596 Sum_probs=0.0
Q ss_pred HHHHHCCCEEEEEEEC
Q ss_conf 6444212537898611
Q gi|254780235|r 8 LFSFCKAGTVFLSLKK 23 (74)
Q Consensus 8 lfsfckagtvflslkk 23 (74)
.||.-+.||+|+..||
T Consensus 58 i~s~~~DG~~FlDFkK 73 (128)
T 1acc_A 58 ISSLRQDGKTFIDFKK 73 (128)
T ss_dssp CEEECTTSCEEEESST
T ss_pred HHHHHHCCCEECCCHH
T ss_conf 1332204603321010
Done!