BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254780235|ref|YP_003064648.1| hypothetical protein
CLIBASIA_00600 [Candidatus Liberibacter asiaticus str. psy62]
         (74 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254780235|ref|YP_003064648.1| hypothetical protein CLIBASIA_00600 [Candidatus Liberibacter
          asiaticus str. psy62]
          Length = 74

 Score =  145 bits (367), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 74/74 (100%), Positives = 74/74 (100%)

Query: 1  MFVKEIFLFSFCKAGTVFLSLKKDMYLGWDNNSMFILKQEFFIFMMEKLVCLLLCVCGML 60
          MFVKEIFLFSFCKAGTVFLSLKKDMYLGWDNNSMFILKQEFFIFMMEKLVCLLLCVCGML
Sbjct: 1  MFVKEIFLFSFCKAGTVFLSLKKDMYLGWDNNSMFILKQEFFIFMMEKLVCLLLCVCGML 60

Query: 61 WFSSSGIFAYLNIG 74
          WFSSSGIFAYLNIG
Sbjct: 61 WFSSSGIFAYLNIG 74


>gi|254780612|ref|YP_003065025.1| putative transmembrane protein [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 503

 Score = 20.8 bits (42), Expect = 4.5,   Method: Composition-based stats.
 Identities = 7/15 (46%), Positives = 11/15 (73%)

Query: 26  YLGWDNNSMFILKQE 40
           Y+G D NS F+L ++
Sbjct: 303 YIGGDENSTFVLGKK 317


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.338    0.148    0.494 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 46,910
Number of Sequences: 1233
Number of extensions: 1500
Number of successful extensions: 5
Number of sequences better than 100.0: 3
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 2
Number of HSP's gapped (non-prelim): 3
length of query: 74
length of database: 328,796
effective HSP length: 44
effective length of query: 30
effective length of database: 274,544
effective search space:  8236320
effective search space used:  8236320
T: 11
A: 40
X1: 15 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.8 bits)
S2: 31 (16.5 bits)