RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddA 
           21,609 sequences; 6,263,737 total letters

Searching..................................................done

Query= gi|254780236|ref|YP_003064649.1| 50S ribosomal protein L17
[Candidatus Liberibacter asiaticus str. psy62]
         (136 letters)



>gnl|CDD|30552 COG0203, RplQ, Ribosomal protein L17 [Translation, ribosomal
           structure and biogenesis].
          Length = 116

 Score =  168 bits (428), Expect = 4e-43
 Identities = 75/116 (64%), Positives = 90/116 (77%)

Query: 1   MRHAISGRKLNRTSSHRKAMFSNMAASIIWHEQIVTTLPKAKELRPIVEKLVTLGKKGGL 60
           MRH   GRKL RTSSHRKAM  N+A S+I HE+I TTLPKAKELR +VEKL+TL KKG L
Sbjct: 1   MRHRKKGRKLGRTSSHRKAMLRNLATSLIEHERIETTLPKAKELRRVVEKLITLAKKGDL 60

Query: 61  HSLRLAISKIGDVDVVNKLFGIIAKRYSDRSGGYLRIMKRGFRYGDSAPMAVIEFV 116
            + RLA +++ D D V KLF  IA RY++R+GGY RI+K GFR GD+APMA+IE V
Sbjct: 61  ANRRLAFARLRDKDAVKKLFDEIAPRYAERNGGYTRILKLGFRRGDNAPMAIIELV 116


>gnl|CDD|144696 pfam01196, Ribosomal_L17, Ribosomal protein L17. 
          Length = 97

 Score =  153 bits (390), Expect = 1e-38
 Identities = 57/97 (58%), Positives = 72/97 (74%)

Query: 20  MFSNMAASIIWHEQIVTTLPKAKELRPIVEKLVTLGKKGGLHSLRLAISKIGDVDVVNKL 79
           +  N+A S+I HE+I TTL KAKELRP  EKL+TL KKG LH+ R A+S + D + V KL
Sbjct: 1   LLRNLATSLIRHERIETTLAKAKELRPYAEKLITLAKKGDLHARRQALSFLRDKEAVKKL 60

Query: 80  FGIIAKRYSDRSGGYLRIMKRGFRYGDSAPMAVIEFV 116
           F  +A RY+DR+GGY RI+K G R GD+APMA+IE V
Sbjct: 61  FDELAPRYADRNGGYTRIIKLGPRRGDNAPMAIIELV 97


>gnl|CDD|38490 KOG3280, KOG3280, KOG3280, Mitochondrial/chloroplast ribosomal
           protein L17 [Translation, ribosomal structure and
           biogenesis].
          Length = 171

 Score =  103 bits (258), Expect = 2e-23
 Identities = 60/142 (42%), Positives = 81/142 (57%), Gaps = 6/142 (4%)

Query: 1   MRHAISGRKLNRTSSHRKAMFSNMAASIIWHEQIVTTLPKAKELRPIVEKLVTLGKKGGL 60
           M H     KL R  +HR A+  N+   ++ HE+I TT  +AKE R   EKL+TLGKK G 
Sbjct: 8   MTHGRRKLKLGRPPAHRLALLRNLVTQLVKHERIETTWARAKEARRYAEKLITLGKKAGS 67

Query: 61  HSLRLAISKIGDV---DVVNKLFGIIAKRYSDRSGGYLRIMKRGFRYGDSAPMAVIEFVD 117
              R A    G +   D+++KLF ++A RY DR+GGY R+++   R GD APMAV+E V 
Sbjct: 68  LHERTARMADGWLREKDLLHKLFTVLAPRYKDRNGGYTRLLRLPPRRGDRAPMAVLELVG 127

Query: 118 RDLS--AKGTPVSRKS-HKVEK 136
             L   A   P +R + HKV  
Sbjct: 128 NPLPQQAADRPDTRVNLHKVLL 149


>gnl|CDD|37180 KOG1969, KOG1969, KOG1969, DNA replication checkpoint protein
           CHL12/CTF18 [Energy production and conversion,
           Replication, recombination and repair].
          Length = 877

 Score = 30.8 bits (69), Expect = 0.14
 Identities = 14/69 (20%), Positives = 24/69 (34%), Gaps = 5/69 (7%)

Query: 22  SNMAASIIWHEQIVTTLPKAKELRPIVEKLVTLGKKGGLHS-----LRLAISKIGDVDVV 76
            + + S+    + +  L K    R I E+L  L  +  LH      L+   S    +   
Sbjct: 538 KSNSDSLFSWWKEIFQLRKKDRHRSIDEQLYGLLNQVELHGNSERVLQGCFSIFLRLKYS 597

Query: 77  NKLFGIIAK 85
           +   G  A 
Sbjct: 598 DLGIGKPAN 606


  Database: CddA
    Posted date:  Feb 4, 2011  9:38 PM
  Number of letters in database: 6,263,737
  Number of sequences in database:  21,609
  
Lambda     K      H
   0.321    0.135    0.382 

Gapped
Lambda     K      H
   0.267   0.0830    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 1,545,960
Number of extensions: 74676
Number of successful extensions: 137
Number of sequences better than 10.0: 1
Number of HSP's gapped: 136
Number of HSP's successfully gapped: 7
Length of query: 136
Length of database: 6,263,737
Length adjustment: 84
Effective length of query: 52
Effective length of database: 4,448,581
Effective search space: 231326212
Effective search space used: 231326212
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (23.6 bits)