RPS-BLAST 2.2.22 [Sep-27-2009] Database: mmdb70 33,805 sequences; 4,956,049 total letters Searching..................................................done Query= gi|254780236|ref|YP_003064649.1| 50S ribosomal protein L17 [Candidatus Liberibacter asiaticus str. psy62] (136 letters) >3i1n_N 50S ribosomal protein L17; ribosome structure, protein-RNA complex, acetylation, ribonucleoprotein, ribosomal protein, RNA-binding, rRNA- binding, methylation; 3.19A {Escherichia coli k-12} PDB: 1p85_L 1p86_L 1vs8_N 2aw4_N 2awb_N 1vs6_N 2i2v_N 2j28_N 2i2t_N* 2qao_N* 2qba_N* 2qbc_N* 2qbe_N 2qbg_N 2qbi_N* 2qbk_N* 2qov_N 2qox_N 2qoz_N* 2qp1_N* ... (N:) Length = 127 Score = 162 bits (412), Expect = 1e-41 Identities = 70/125 (56%), Positives = 89/125 (71%) Query: 1 MRHAISGRKLNRTSSHRKAMFSNMAASIIWHEQIVTTLPKAKELRPIVEKLVTLGKKGGL 60 MRH SGR+LNR SSHR+AMF NMA S++ HE I TTLPKAKELR +VE L+TL K + Sbjct: 1 MRHRKSGRQLNRNSSHRQAMFRNMAGSLVRHEIIKTTLPKAKELRRVVEPLITLAKTDSV 60 Query: 61 HSLRLAISKIGDVDVVNKLFGIIAKRYSDRSGGYLRIMKRGFRYGDSAPMAVIEFVDRDL 120 + RLA ++ D ++V KLF + R++ R+GGY RI+K GFR GD+APMA IE VDR Sbjct: 61 ANRRLAFARTRDNEIVAKLFNELGPRFASRAGGYTRILKCGFRAGDNAPMAYIELVDRSE 120 Query: 121 SAKGT 125 A+ Sbjct: 121 KAEAA 125 >3bbo_P Ribosomal protein L17; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Nicotiana tabacum} (P:) Length = 205 Score = 157 bits (398), Expect = 6e-40 Identities = 46/116 (39%), Positives = 69/116 (59%) Query: 1 MRHAISGRKLNRTSSHRKAMFSNMAASIIWHEQIVTTLPKAKELRPIVEKLVTLGKKGGL 60 MRH KLNR R+A+ + ++ H +I TT +A+ +R V+K++T+ K G L Sbjct: 90 MRHGRKVPKLNRPPDQRRALLRGLTTQLLKHGRIKTTKARARAVRKYVDKMITMAKDGSL 149 Query: 61 HSLRLAISKIGDVDVVNKLFGIIAKRYSDRSGGYLRIMKRGFRYGDSAPMAVIEFV 116 H R A+ I + +V+ LF + RY +R+GGY RI++ R GD+APMA IE V Sbjct: 150 HKRRQALGFIYEKQIVHALFAEVPDRYGERNGGYTRIIRTLPRRGDNAPMAYIELV 205 >2zjr_K 50S ribosomal protein L17; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} (K:) Length = 116 Score = 148 bits (375), Expect = 3e-37 Identities = 59/116 (50%), Positives = 75/116 (64%) Query: 1 MRHAISGRKLNRTSSHRKAMFSNMAASIIWHEQIVTTLPKAKELRPIVEKLVTLGKKGGL 60 MRH +GRKLNR SS R A+ A +++ +I TTL KAKELRP VE+L+T K G L Sbjct: 1 MRHGKAGRKLNRNSSARVALARAQATALLREGRIQTTLTKAKELRPFVEQLITTAKGGDL 60 Query: 61 HSLRLAISKIGDVDVVNKLFGIIAKRYSDRSGGYLRIMKRGFRYGDSAPMAVIEFV 116 HS RL I D DVV K+ +A +Y++R GGY RI++ G R GD MA+IE V Sbjct: 61 HSRRLVAQDIHDKDVVRKVMDEVAPKYAERPGGYTRILRVGTRRGDGVTMALIELV 116 >1gd8_A 50S ribosomal protein L17; two domains, ribosomal protein S8-like domain, Trp repressor-like domain, helix-turn-helix motif; 2.30A {Thermus thermophilus} (A:) Length = 118 Score = 148 bits (374), Expect = 4e-37 Identities = 63/118 (53%), Positives = 82/118 (69%), Gaps = 1/118 (0%) Query: 1 MRHAISGRKLNRTSSHRKAMFSNMAASIIWHEQIVTTLPKAKELRPIVEKLVTLGKKGGL 60 MRH SGRKLNR SSHR A++ N A S++ H +I TT+PKAKELR V+ L+ L K+G L Sbjct: 1 MRHLKSGRKLNRHSSHRLALYRNQAKSLLTHGRITTTVPKAKELRGFVDHLIHLAKRGDL 60 Query: 61 HSLRLAISKIGDVDVVNKLFGIIAKRYSDRSGGYLRIMKRG-FRYGDSAPMAVIEFVD 117 H+ RL + + DV +V KLF IA RY DR GGY R++K R GD AP+A++E V+ Sbjct: 61 HARRLVLRDLQDVKLVRKLFDEIAPRYRDRQGGYTRVLKLAERRRGDGAPLALVELVE 118 >2cqm_A Ribosomal protein L17 isolog; alpha and beta (A+B), structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} (A:) Length = 122 Score = 144 bits (364), Expect = 5e-36 Identities = 39/120 (32%), Positives = 62/120 (51%), Gaps = 2/120 (1%) Query: 14 SSHRKAMFSNMAASIIWHEQIVTTLPKAKELRPIVEKLVTLGKKGGLHS--LRLAISKIG 71 SS + N+ ++ HE+I + E+R EKL+ GK G + +R+A + Sbjct: 2 SSGSSGLLRNLLTGLVRHERIEAPWARVDEMRGYAEKLIDYGKLGDTNERAMRMADFWLT 61 Query: 72 DVDVVNKLFGIIAKRYSDRSGGYLRIMKRGFRYGDSAPMAVIEFVDRDLSAKGTPVSRKS 131 + D++ KLF ++A RY D++GGY R+++ R D A MAVIE+ L P S Sbjct: 62 EKDLIPKLFQVLAPRYKDQTGGYTRMLQIPNRSLDRAKMAVIEYKGNCLPPLPLPSGPSS 121 >2uw1_A Desaturase, plastid delta4 multifunctional acyl-ACYL carrier protein desaturase; electron transfer, four-helix bundle, oxidoreductase; HET: GVM; 1.95A {Hedera helix} PDB: 2uw1_B* 1oq4_A 1oq7_A 1oq9_A 1oqb_A 1afr_A 2j2f_A (A:156-321) Length = 166 Score = 27.8 bits (62), Expect = 0.48 Identities = 12/71 (16%), Positives = 29/71 (40%), Gaps = 3/71 (4%) Query: 64 RLAISKIGDVDVVNKLFGIIAKRYSDRSGGYLRIMKRGF-RYGDSAPMAVIEFVDRDLSA 122 +LA GD + + G IA + Y +I+++ D+ +A + + + ++ Sbjct: 28 KLA-QHYGD-KKLAHICGSIASDEKRHATAYTKIVEKLAEIDPDTTVIAFADMMRKKITM 85 Query: 123 KGTPVSRKSHK 133 + S + Sbjct: 86 PAHLMYDGSDE 96 Database: mmdb70 Posted date: Jun 20, 2010 3:12 AM Number of letters in database: 4,956,049 Number of sequences in database: 33,805 Lambda K H 0.321 0.135 0.382 Gapped Lambda K H 0.267 0.0641 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 33805 Number of Hits to DB: 991,296 Number of extensions: 40645 Number of successful extensions: 67 Number of sequences better than 10.0: 1 Number of HSP's gapped: 65 Number of HSP's successfully gapped: 8 Length of query: 136 Length of database: 4,956,049 Length adjustment: 80 Effective length of query: 56 Effective length of database: 2,251,649 Effective search space: 126092344 Effective search space used: 126092344 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 50 (23.2 bits)