BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254780236|ref|YP_003064649.1| 50S ribosomal protein L17
[Candidatus Liberibacter asiaticus str. psy62]
         (136 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254780236|ref|YP_003064649.1| 50S ribosomal protein L17 [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 136

 Score =  275 bits (703), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 136/136 (100%), Positives = 136/136 (100%)

Query: 1   MRHAISGRKLNRTSSHRKAMFSNMAASIIWHEQIVTTLPKAKELRPIVEKLVTLGKKGGL 60
           MRHAISGRKLNRTSSHRKAMFSNMAASIIWHEQIVTTLPKAKELRPIVEKLVTLGKKGGL
Sbjct: 1   MRHAISGRKLNRTSSHRKAMFSNMAASIIWHEQIVTTLPKAKELRPIVEKLVTLGKKGGL 60

Query: 61  HSLRLAISKIGDVDVVNKLFGIIAKRYSDRSGGYLRIMKRGFRYGDSAPMAVIEFVDRDL 120
           HSLRLAISKIGDVDVVNKLFGIIAKRYSDRSGGYLRIMKRGFRYGDSAPMAVIEFVDRDL
Sbjct: 61  HSLRLAISKIGDVDVVNKLFGIIAKRYSDRSGGYLRIMKRGFRYGDSAPMAVIEFVDRDL 120

Query: 121 SAKGTPVSRKSHKVEK 136
           SAKGTPVSRKSHKVEK
Sbjct: 121 SAKGTPVSRKSHKVEK 136


>gi|254781206|ref|YP_003065619.1| hypothetical protein CLIBASIA_05565 [Candidatus Liberibacter
            asiaticus str. psy62]
          Length = 1246

 Score = 26.2 bits (56), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 16/44 (36%), Positives = 22/44 (50%)

Query: 44   LRPIVEKLVTLGKKGGLHSLRLAISKIGDVDVVNKLFGIIAKRY 87
            L PI     T+ K GG  SL +   K+   DV+  L   +AKR+
Sbjct: 1009 LHPIYSVSKTIQKAGGDPSLMMDYEKVEPSDVMAGLPDDLAKRF 1052


>gi|254780480|ref|YP_003064893.1| 2'-deoxycytidine 5'-triphosphate deaminase [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 367

 Score = 24.3 bits (51), Expect = 0.97,   Method: Compositional matrix adjust.
 Identities = 17/61 (27%), Positives = 28/61 (45%), Gaps = 5/61 (8%)

Query: 47  IVEKLVTLGKKGGLHSLRLAISKIGDVDVVNKLFGIIAKRYSDRSGG-----YLRIMKRG 101
           IV  + +L  K G+ +     S IG +DV  ++ G  ++ +   S       YL I+ R 
Sbjct: 86  IVPLMESLNLKNGISAYANPKSSIGRIDVFARVIGDRSQEFDSISPNYSGPLYLEILPRT 145

Query: 102 F 102
           F
Sbjct: 146 F 146


>gi|254781193|ref|YP_003065606.1| putative DNA polymerase from bacteriophage origin [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 675

 Score = 22.3 bits (46), Expect = 3.0,   Method: Composition-based stats.
 Identities = 9/29 (31%), Positives = 16/29 (55%)

Query: 96  RIMKRGFRYGDSAPMAVIEFVDRDLSAKG 124
           R + R + YG      +++ V RD+ A+G
Sbjct: 585 RQLTREYTYGGKLTENIVQAVSRDILAEG 613


>gi|254780751|ref|YP_003065164.1| ribonuclease E [Candidatus Liberibacter asiaticus str. psy62]
          Length = 723

 Score = 21.6 bits (44), Expect = 6.4,   Method: Composition-based stats.
 Identities = 6/25 (24%), Positives = 16/25 (64%)

Query: 29  IWHEQIVTTLPKAKELRPIVEKLVT 53
           +W ++ +  +PK++ L  I + +V+
Sbjct: 597 VWQDEALLPIPKSESLEDIQDNIVS 621


>gi|254780823|ref|YP_003065236.1| double-strand break repair protein AddB [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 1040

 Score = 20.8 bits (42), Expect = 8.9,   Method: Composition-based stats.
 Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 1/38 (2%)

Query: 25  AASIIWHEQIVTTLPKAKELRPIVEKLVTLGKKGGLHS 62
           A +I W + I+T L   + ++P +EK  TL   G L S
Sbjct: 600 ANAIEWID-IITRLIDGETVKPKIEKSSTLFILGTLES 636


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.321    0.135    0.382 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 81,225
Number of Sequences: 1233
Number of extensions: 3013
Number of successful extensions: 9
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 2
Number of HSP's gapped (non-prelim): 8
length of query: 136
length of database: 328,796
effective HSP length: 65
effective length of query: 71
effective length of database: 248,651
effective search space: 17654221
effective search space used: 17654221
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 34 (17.7 bits)