HHsearch alignment for GI: 254780237 and conserved domain: COG1761

>COG1761 RPB11 DNA-directed RNA polymerase, subunit L [Transcription].

Probab=92.39  E-value=0.32  Score=28.12  Aligned_cols=49  Identities=16%  Similarity=0.350  Sum_probs=39.8

Q ss_pred             EEEEEEEEEEEECCCCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             1442235776411688776218999999389617779999999999998887622
Q gi|254780237|r  179 PIKKVSYTVESAREGQVLDYDKLSMTIDTDGSITGEDSVALASRILQDQLGMFIN  233 (340)
Q Consensus       179 PV~~Vny~Ve~~rvg~~t~~dkL~lEI~TnGsi~P~eAl~~Aa~iL~~~l~~f~~  233 (340)
T Consensus        41 ~V~~a~Y~i~HP~~------~~~~i~Ikt~~~~dp~~aL~~A~~~i~~~~~~l~~   89 (99)
T COG1761          41 DVEFAAYSIPHPLI------DNPKIRIKTKGGVDPKEALKRAARKILKDLEELLD   89 (99)
T ss_pred             CEEEEEEECCCCCC------CCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf             72699875789777------88428999779999799999999999999999999