HHsearch alignment for GI: 254780237 and conserved domain: PRK00783
>PRK00783 DNA-directed RNA polymerase subunit D; Provisional.
Probab=99.88 E-value=4.5e-21 Score=156.67 Aligned_cols=200 Identities=21% Similarity=0.331 Sum_probs=149.3
Q ss_pred CCCCCEEEEEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEEEEE---------CCCCCCCCCCCCCHHHHHHHHHHHCCC
Q ss_conf 78881589999616975667888999998741698306889998---------871443146646244499999840114
Q gi|254780237|r 22 QEEENRTLMIAEPLPRGFAHTLGNALRRVLMSSLRGAAITAVQI---------DGVLHEISSIKGVHEDLTDIILNIKGI 92 (340)
Q Consensus 22 ~~~~~~g~f~~~Ple~G~g~TlGNaLRRvLLssi~G~ait~vkI---------~gv~HEfs~i~GV~EDV~eIiLNLK~I 92 (340)
T Consensus 7 ~~~~~~~~F~l~~----~~~s~aNalRRillseVPt~AId~V~I~~NtS~l~DE~iaHRLgLIP--------l~~~~~~~ 74 (265)
T PRK00783 7 ELSDDSAKFVLSG----VTPAFANALRRAMIAEVPTLAIEDVNIYDNTSALFDEVLAHRLGLIP--------LKTDLDRF 74 (265)
T ss_pred ECCCCEEEEEEEC----CCHHHHHHHHHHHHHCCCEEEEEEEEEEECCCCCCCCHHHEEEEEEE--------ECCCHHHC
T ss_conf 8779889999978----98899889999998739702799999985873145533316861166--------01365441
Q ss_pred EEEEC--------CCCCEEEEEEEECCEEEEEEEEEC-CCCEEEECCCEEEEEECCCCEEEEEEEEECCCCCEECCCCC-
Q ss_conf 17772--------798279999994471699633513-89859988880899977896499999974687632034444-
Q gi|254780237|r 93 NLKMS--------GDSHKRVTIFKRGPGVVTAGDIQT-VNDIEVLNPDHVICNLDVDAVVRMELTVSKGHGYVPAKHHR- 162 (340)
Q Consensus 93 ~~k~~--------~~~~~~~~l~~~Gp~~vtA~Di~~-p~~veivNpd~~IaTl~~~~~l~iel~ie~G~GY~~~e~~~- 162 (340)
T Consensus 75 ~~~~~~~~~~~~~~~~~v~~~l~~~~~~~V~s~dl~~~d~~v~pv~~~I~I~kL~~GQ~i~l~a~a~~G~Gk~HAKwsPv 154 (265)
T PRK00783 75 VPRSECSCGGAGCPLCTVTLSLSAEGPGVVYSGDLISSDPDVKPVDPNIPIVKLKEGQKLVLEAVAKLGRGKEHAKWQPT 154 (265)
T ss_pred EECCCCCCCCCCCCCEEEEEEEEEECCCEEEHHHCCCCCCCCEECCCCEEEEEECCCCEEEEEEEEECCCCCCCCEECCC
T ss_conf 52144666666898638999999623863777787147997152489903899079998999999982444316352662
Q ss_pred -----------------------CCCCCCCEECCCC-----------CHHEEEEEEEEEEEECCCCCCCCCEEEEEEEEC
Q ss_conf -----------------------6557543021243-----------111144223577641168877621899999938
Q gi|254780237|r 163 -----------------------TENDPIGLITIDA-----------LYSPIKKVSYTVESAREGQVLDYDKLSMTIDTD 208 (340)
Q Consensus 163 -----------------------~~~~~ig~i~iDa-----------~FsPV~~Vny~Ve~~rvg~~t~~dkL~lEI~Tn 208 (340)
T Consensus 155 ~~~~y~~~p~i~i~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~~d~f~F~VES~ 234 (265)
T PRK00783 155 TVCGYKYYPEITISEDCDGCGECKEECPRSVLEVEENKVEVTEEDLEKCSLCRLCERACEGNAIRVGADENRFIFTVETD 234 (265)
T ss_pred EEEEEEECCEEEECCCCHHHHHHHHHCCCCCCCCCCCCEEEEECCHHHCCHHHHHEECCCCCCEEEEEECCEEEEEEECC
T ss_conf 58999744226863661078888765777622135882168744612254223420016667268996189799999767
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 9617779999999999998887622
Q gi|254780237|r 209 GSITGEDSVALASRILQDQLGMFIN 233 (340)
Q Consensus 209 Gsi~P~eAl~~Aa~iL~~~l~~f~~ 233 (340)
T Consensus 235 G~l~p~~i~~~A~~iL~~Kl~~l~~ 259 (265)
T PRK00783 235 GSLPVKEILLIALKILKDKADELIE 259 (265)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 8889999999999999999999999