>cd07027 RNAP_RPB11_like RPB11 subunit of RNA polymerase. The eukaryotic RPB11 subunit of RNA polymerase (RNAP), as well as its archaeal (L subunit) and bacterial (alpha subunit) counterparts, is involved in the assembly of RNAP subunits. RNAP is a large multi-subunit complex responsible for the synthesis of RNA. It is the principal enzyme of the transcription process, and is a final target in many regulatory pathways that control gene expression in all living cells. At least three distinct RNAP complexes are found in eukaryotic nuclei: RNAP I, RNAP II, and RNAP III, for the synthesis of ribosomal RNA precursor, mRNA precursor, and 5S and tRNA, respectively. A single distinct RNAP complex is found in prokaryotes and archaea, which may be responsible for the synthesis of all RNAs. The assembly of the two largest eukaryotic RNAP subunits that provide most of the enzyme's catalytic functions depends on the presence of RPB3/RPB11 heterodimer subunits. This is also true for the archaeal (D/

Probab=94.20  E-value=0.16  Score=30.18  Aligned_cols=46  Identities=20%  Similarity=0.273  Sum_probs=35.6

Q ss_pred             EEEEEEEEEEECCCCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf             4422357764116887762189999993896177799999999999988876
Q gi|254780237|r  180 IKKVSYTVESAREGQVLDYDKLSMTIDTDGSITGEDSVALASRILQDQLGMF  231 (340)
Q Consensus       180 V~~Vny~Ve~~rvg~~t~~dkL~lEI~TnGsi~P~eAl~~Aa~iL~~~l~~f  231 (340)
T Consensus        36 V~fA~Y~ipH------Pl~~~~~lrIqT~~~~~p~~al~~a~~~L~~~~~~l   81 (83)
T cd07027          36 VDFARYYIKH------PVIDKIQIRIQTKSGIKPKDALKRAVNKLSKLYEHL   81 (83)
T ss_pred             EEEEEEECCC------CCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf             2798410889------988940899998999998999999999999998750