HHsearch alignment for GI: 254780237 and conserved domain: pfam01000

>pfam01000 RNA_pol_A_bac RNA polymerase Rpb3/RpoA insert domain. Members of this family include: alpha subunit from eubacteria alpha subunits from chloroplasts Rpb3 subunits from eukaryotes RpoD subunits from archaeal

Probab=100.00  E-value=5.8e-37  Score=259.57  Aligned_cols=115  Identities=40%  Similarity=0.675  Sum_probs=108.7

Q ss_pred             EEECCCCCCCCCCCCCHHHHHHHHHHHCCCEEEECCCC--CEEEEEEEECCEEEEEEEEECCCCEEEECCCEEEEEECCC
Q ss_conf             99887144314664624449999984011417772798--2799999944716996335138985998888089997789
Q gi|254780237|r   63 VQIDGVLHEISSIKGVHEDLTDIILNIKGINLKMSGDS--HKRVTIFKRGPGVVTAGDIQTVNDIEVLNPDHVICNLDVD  140 (340)
Q Consensus        63 vkI~gv~HEfs~i~GV~EDV~eIiLNLK~I~~k~~~~~--~~~~~l~~~Gp~~vtA~Di~~p~~veivNpd~~IaTl~~~  140 (340)
T Consensus         1 V~I~gv~HEf~~I~GV~Edv~~IilNlK~i~~~~~~~~~~~~~~~l~~~gp~~VtA~Di~~~~~veivnpd~~Iatl~~~   80 (117)
T pfam01000         1 VYINGVAHEFGLIPGVSEDVLEIILNLKELVCKIEGCEECSVTLTLDVKGPGEVTAGDLESDPDVEIVNPDILIATLRKG   80 (117)
T ss_pred             CEECCEEEEECCCCCCHHHHHHHHHCCCCCEEEECCCCCCEEEEEEEEECCCEEEEEEECCCCCEEECCCCEEEEEECCC
T ss_conf             93787675612589832609999736465399832688815999999745838994016168854864987599997899


Q ss_pred             CEEEEEEEEECCCCCEECCCCCCCCCCCCEECCCCCHH
Q ss_conf             64999999746876320344446557543021243111
Q gi|254780237|r  141 AVVRMELTVSKGHGYVPAKHHRTENDPIGLITIDALYS  178 (340)
Q Consensus       141 ~~l~iel~ie~G~GY~~~e~~~~~~~~ig~i~iDa~Fs  178 (340)
T Consensus        81 ~~l~~e~~i~~GrGY~~ae~~~~~~~-~g~i~iDa~fs  117 (117)
T pfam01000        81 QELELEAYAKKGRGYVHAKENKEDEE-EGRIPVDSIFS  117 (117)
T ss_pred             CEEEEEEEEECCCCCCCHHHCCCCCC-CCEEEECCCCC
T ss_conf             78999999989897315544688899-99898263469