HHsearch alignment of GI: 254780237 and MMDB domain: 1bdf_A_1-50_179-235
>1bdf_A (A:1-50,A:179-235) RNA polymerase alpha subunit; nucleotidyltransferase, assemble; 2.50A {Escherichia coli}
Probab=99.97 E-value=9.2e-32 Score=225.51 Aligned_cols=107 Identities=40% Similarity=0.697 Sum_probs=100.0
Q ss_pred CCCHHHHCCCCCCCEEEECCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCCCCCCHHH
Q ss_conf 52205751797420158636788815899996169756678889999987416983068899988714431466462444
Q gi|254780237|r 2 IQKNWQELIKPNNIEYIVLGQEEENRTLMIAEPLPRGFAHTLGNALRRVLMSSLRGAAITAVQIDGVLHEISSIKGVHED 81 (340)
Q Consensus 2 ~~~~~~~~~~P~~i~~~~~~~~~~~~g~f~~~Ple~G~g~TlGNaLRRvLLssi~G~ait~vkI~gv~HEfs~i~GV~ED 81 (340)
|+++|.+|++|..+++ ++.+++||+|+++|||||||+||||||||||||
T Consensus 1 M~~~~~~~~~~~~~~~---~~~~~~~~~f~~~Ple~g~g~TlGNaLRRvLLs---------------------------- 49 (107)
T 1bdf_A 1 MQGSVTEFLKPRLVDI---EQVSSTHAKVTLEPLERGFGHTLGNALRAILLS---------------------------- 49 (107)
T ss_dssp -CCCSSCSCCCCEEEE---EESSSSEEEEEEEEEETTHHHHHHHHHHHHHTT----------------------------
T ss_pred CCHHHHHHCCCCEEEE---CCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHH----------------------------
T ss_conf 9605667218857786---257885789999578996353678899999886----------------------------
Q ss_pred HHHHHHHHCCCEEEECCCCCEEEEEEEECCEEEEEEEEECCCCEEEECCCEEEEEECCCCEEEEEEEEECCCCCEECCCC
Q ss_conf 99999840114177727982799999944716996335138985998888089997789649999997468763203444
Q gi|254780237|r 82 LTDIILNIKGINLKMSGDSHKRVTIFKRGPGVVTAGDIQTVNDIEVLNPDHVICNLDVDAVVRMELTVSKGHGYVPAKHH 161 (340)
Q Consensus 82 V~eIiLNLK~I~~k~~~~~~~~~~l~~~Gp~~vtA~Di~~p~~veivNpd~~IaTl~~~~~l~iel~ie~G~GY~~~e~~ 161 (340)
T Consensus 50 -------------------------------------------------------------------------------- 49 (107)
T 1bdf_A 50 -------------------------------------------------------------------------------- 49 (107)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
T ss_conf --------------------------------------------------------------------------------
Q ss_pred CCCCCCCCEECCCCCHHEEEEEEEEEEEECCCCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 46557543021243111144223577641168877621899999938961777999999999999888762244
Q gi|254780237|r 162 RTENDPIGLITIDALYSPIKKVSYTVESAREGQVLDYDKLSMTIDTDGSITGEDSVALASRILQDQLGMFINFE 235 (340)
Q Consensus 162 ~~~~~~ig~i~iDa~FsPV~~Vny~Ve~~rvg~~t~~dkL~lEI~TnGsi~P~eAl~~Aa~iL~~~l~~f~~~~ 235 (340)
|||++|+|.|+++++|+.++||+|+|||||||||+|+||+.+||++|++||.+|.+++
T Consensus 50 ----------------sPV~~v~Y~Ve~~~~~~~~~~ekL~leI~TdGsI~P~eAl~~Aa~iL~~~~~~~~~~n 107 (107)
T 1bdf_A 50 ----------------SPVERIAYNVEAARVEQRTDLDKLVIEMETNGTIDPEEAIRRAATILAEQLEAFVDLR 107 (107)
T ss_dssp ----------------SSEEEEEEECCBCCCSSCSSEEEEEEEEEECSSSCHHHHHHHHHHHHHHHGGGGC---
T ss_pred ----------------CCEEEEEECCEEECCCCCCCCEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf ----------------4434235110420247898606999999979989999999999999999999875479