HHsearch alignment of GI: 254780237 and MMDB domain: 1coo_A_

>1coo_A (A:) RNA polymerase alpha subunit; transcription regulation, nucleotidyl transferase; NMR {Escherichia coli K12}

Probab=99.90  E-value=9.8e-25  Score=179.98  Aligned_cols=85  Identities=54%  Similarity=0.963  Sum_probs=78.5

Q ss_pred             HCCCCHHHHHHHCCHHHCCCCHHHHHHHHHCCCCCHHHHHHCCHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf             00000112333111221011058889898839837188874498888618898864499999999980831267687898
Q gi|254780237|r  246 NVKSLPFNPALLKKVEELELSVRSTNCLRGENIVYMGDLIQRTEADMLRMANFGRKSLVEIKGVLGTMGLFLGMNLPDWP  325 (340)
Q Consensus       246 ~~~~~~~~~~L~~~IeeLeLSvRs~NcLk~a~I~tigdLv~~s~~dLl~ikNfG~KSl~EI~~~L~~~gl~lg~~l~~~~  325 (340)
                      .....+..+.+.++|++|+||+|++|||+++||+|||||+++|++||+++||||+||++||+++|+++|++|||++++|+
T Consensus        12 ~~~~~~~~~~l~~~I~~L~Ls~Rs~N~Lk~~gI~ti~dL~~~s~~dLl~i~n~G~kSl~Ei~~~L~~~gl~lg~~~~~~~   91 (98)
T 1coo_A           12 KEEKPEFDPILLRPVDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLKTPNLGKKSLTEIKDVLASRGLSLGMRLENWP   91 (98)
T ss_dssp             ------CCHHHHSBGGGGTCCTTTHHHHHTTTCCBHHHHHTSCHHHHTTSTTCCHHHHHHHHHHHHHTTCCTTCCCSSSS
T ss_pred             CCCCCCHHHHHHCCHHHHCCCHHHHHHHHHCCCCCHHHHHHCCHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCC
T ss_conf             33330034674094998268899998999939975999985899999867798787899999999982867688789999


Q ss_pred             HHHHH
Q ss_conf             67799
Q gi|254780237|r  326 PESIE  330 (340)
Q Consensus       326 ~~~~~  330 (340)
                      +..++
T Consensus        92 ~~~~~   96 (98)
T 1coo_A           92 PASIA   96 (98)
T ss_dssp             CSTTC
T ss_pred             CCCCC
T ss_conf             74555