HHsearch alignment of GI: 254780237 and MMDB domain: 1lb2_B_
>1lb2_B (B:) DNA-directed RNA polymerase alpha chain; protein-DNA complex, gene-regulatory, gene regulation/DNA complex; HET: CMP; 3.10A {Escherichia coli}
Probab=99.91 E-value=2.3e-24 Score=177.54 Aligned_cols=81 Identities=57% Similarity=1.030 Sum_probs=77.7
Q ss_pred HHHHHHHCCHHHCCCCHHHHHHHHHCCCCCHHHHHHCCHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHH
Q ss_conf 11233311122101105888989883983718887449888861889886449999999998083126768789867799
Q gi|254780237|r 251 PFNPALLKKVEELELSVRSTNCLRGENIVYMGDLIQRTEADMLRMANFGRKSLVEIKGVLGTMGLFLGMNLPDWPPESIE 330 (340)
Q Consensus 251 ~~~~~L~~~IeeLeLSvRs~NcLk~a~I~tigdLv~~s~~dLl~ikNfG~KSl~EI~~~L~~~gl~lg~~l~~~~~~~~~ 330 (340)
..+..+.++|++|+||+|++|||+++||+|||||+++|++||++++|||+||++||+++|+++|++|||++++|+|..++
T Consensus 3 ~~~~~l~~~I~~L~Ls~R~~n~L~~agI~ti~dL~~~s~~dLl~i~n~G~kSl~EI~~~L~~~gl~lg~~~~~~~~~~~e 82 (84)
T 1lb2_B 3 EFDPILLRPVDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLKTPNLGKKSLTEIKDVLASRGLSLGMRLENWPPASIA 82 (84)
T ss_dssp --CCTTTSBGGGGCCCHHHHHHHHHTTCCBHHHHHTCCHHHHHHSTTCCHHHHHHHHHHHHHTTCCSSCCCSCC------
T ss_pred CCCHHHCCCHHHHCCCHHHHHHHHHHCCCCHHHHHHCCHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC
T ss_conf 53678629798707889999999891894699987289999974889878899999999998598789989998921223
Q ss_pred H
Q ss_conf 9
Q gi|254780237|r 331 E 331 (340)
Q Consensus 331 ~ 331 (340)
+
T Consensus 83 ~ 83 (84)
T 1lb2_B 83 D 83 (84)
T ss_dssp -
T ss_pred C
T ss_conf 4