HHsearch alignment of GI: 254780237 and MMDB domain: 1lb2_B_

>1lb2_B (B:) DNA-directed RNA polymerase alpha chain; protein-DNA complex, gene-regulatory, gene regulation/DNA complex; HET: CMP; 3.10A {Escherichia coli}
Probab=99.91  E-value=2.3e-24  Score=177.54  Aligned_cols=81  Identities=57%  Similarity=1.030  Sum_probs=77.7

Q ss_pred             HHHHHHHCCHHHCCCCHHHHHHHHHCCCCCHHHHHHCCHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHH
Q ss_conf             11233311122101105888989883983718887449888861889886449999999998083126768789867799
Q gi|254780237|r  251 PFNPALLKKVEELELSVRSTNCLRGENIVYMGDLIQRTEADMLRMANFGRKSLVEIKGVLGTMGLFLGMNLPDWPPESIE  330 (340)
Q Consensus       251 ~~~~~L~~~IeeLeLSvRs~NcLk~a~I~tigdLv~~s~~dLl~ikNfG~KSl~EI~~~L~~~gl~lg~~l~~~~~~~~~  330 (340)
                      ..+..+.++|++|+||+|++|||+++||+|||||+++|++||++++|||+||++||+++|+++|++|||++++|+|..++
T Consensus         3 ~~~~~l~~~I~~L~Ls~R~~n~L~~agI~ti~dL~~~s~~dLl~i~n~G~kSl~EI~~~L~~~gl~lg~~~~~~~~~~~e   82 (84)
T 1lb2_B            3 EFDPILLRPVDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLKTPNLGKKSLTEIKDVLASRGLSLGMRLENWPPASIA   82 (84)
T ss_dssp             --CCTTTSBGGGGCCCHHHHHHHHHTTCCBHHHHHTCCHHHHHHSTTCCHHHHHHHHHHHHHTTCCSSCCCSCC------
T ss_pred             CCCHHHCCCHHHHCCCHHHHHHHHHHCCCCHHHHHHCCHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC
T ss_conf             53678629798707889999999891894699987289999974889878899999999998598789989998921223


Q ss_pred             H
Q ss_conf             9
Q gi|254780237|r  331 E  331 (340)
Q Consensus       331 ~  331 (340)
                      +
T Consensus        83 ~   83 (84)
T 1lb2_B           83 D   83 (84)
T ss_dssp             -
T ss_pred             C
T ss_conf             4