HHsearch alignment of GI: 254780237 and MMDB domain: 1twf_C_1-40_169-318
>1twf_C (C:1-40,C:169-318) B44.5, DNA-directed RNA polymerase II 45 kDa polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae}
Probab=95.24 E-value=0.088 Score=31.35 Aligned_cols=123 Identities=17% Similarity=0.184 Sum_probs=73.3
Q ss_pred ECCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHC-CCCCEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEC
Q ss_conf 63678881589999616975667888999998741-69830688999887144314664624449999984011417772
Q gi|254780237|r 19 VLGQEEENRTLMIAEPLPRGFAHTLGNALRRVLMS-SLRGAAITAVQIDGVLHEISSIKGVHEDLTDIILNIKGINLKMS 97 (340)
Q Consensus 19 ~~~~~~~~~g~f~~~Ple~G~g~TlGNaLRRvLLs-si~G~ait~vkI~gv~HEfs~i~GV~EDV~eIiLNLK~I~~k~~ 97 (340)
.+.+.++.+-+|.+. |--..++|||||+||+ --.-+|..+.|..-..+==.++.++.++.....
T Consensus 9 ~I~~~~~~~v~F~L~----~vd~s~ANalRRimiAEKWsPva~v~y~y~P~i~i~~~~~~~e~cp~~v~----------- 73 (190)
T 1twf_C 9 KIREASKDNVDFILS----NVDLAMANSLRRVMIAEKWGPAAAIEFEYDPWNKLKHTDYWYEQDSAKEW----------- 73 (190)
T ss_dssp CCSCCCSSEECCEEB----SSCHHHHHHHHHHHHHCGGCCEEEEEEEECSSTTSCCSCCCCSSCHHHHS-----------
T ss_pred EEEECCCCEEEEEEE----CCCHHHHHHHHHHHHHCEECCCEEEEEEECCCCCCCCCCCCCCCCCHHHC-----------
T ss_conf 999767998999997----88838999999999972554530378752554333445333102423218-----------
Q ss_pred CCCCEEEEEEEECCEEEEEEEEECCCCEEEECCCEEEEEECCCCEEEEEEEEECCCCCEECCCCCCCCCCCCEECCCCCH
Q ss_conf 79827999999447169963351389859988880899977896499999974687632034444655754302124311
Q gi|254780237|r 98 GDSHKRVTIFKRGPGVVTAGDIQTVNDIEVLNPDHVICNLDVDAVVRMELTVSKGHGYVPAKHHRTENDPIGLITIDALY 177 (340)
Q Consensus 98 ~~~~~~~~l~~~Gp~~vtA~Di~~p~~veivNpd~~IaTl~~~~~l~iel~ie~G~GY~~~e~~~~~~~~ig~i~iDa~F 177 (340)
| |+.. +-+ .+.....
T Consensus 74 -------------~-----------------------~s~~--------------~~~---~~~~~~~------------ 88 (190)
T 1twf_C 74 -------------P-----------------------QSKN--------------CEY---EDPPNEG------------ 88 (190)
T ss_dssp -------------C-----------------------CCGG--------------GTT---SCCCCSS------------
T ss_pred -------------C-----------------------CCCC--------------EEE---ECCCCCC------------
T ss_conf -------------7-----------------------6542--------------358---6123335------------
Q ss_pred HEEEEEEEEEEEECCCCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 11442235776411688776218999999389617779999999999998887622
Q gi|254780237|r 178 SPIKKVSYTVESAREGQVLDYDKLSMTIDTDGSITGEDSVALASRILQDQLGMFIN 233 (340)
Q Consensus 178 sPV~~Vny~Ve~~rvg~~t~~dkL~lEI~TnGsi~P~eAl~~Aa~iL~~~l~~f~~ 233 (340)
...++... -++.+|.|+|.|++.|++.+.+|.++|+.-+..|..
T Consensus 89 ----------~~i~v~~~--~d~FiF~VES~Gsl~p~~Iv~~Ai~vLk~Kl~~l~~ 132 (190)
T 1twf_C 89 ----------DPFDYKAQ--ADTFYMNVESVGSIPVDQVVVRGIDTLQKKVASILL 132 (190)
T ss_dssp ----------SCCCTTCC--CCCEEEEEEECSSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred ----------CCEEEECC--CCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf ----------40576336--548999999458879999999999999999999999