HHsearch alignment of GI: 254780237 and MMDB domain: 2a6h_A_48-172
>2a6h_A (A:48-172) DNA-directed RNA polymerase alpha chain; RNA polymerase holoenzyme, streptolydigin, antibiotic, transcription regulation; HET: STD; 2.40A {Thermus thermophilus}
Probab=100.00 E-value=4.7e-42 Score=292.11 Aligned_cols=123 Identities=40% Similarity=0.673 Sum_probs=117.1
Q ss_pred CCCEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHCCCEEEECCC--CCEEEEEEEECCEEEEEEEEECCCCEEEECCCE
Q ss_conf 983068899988714431466462444999998401141777279--827999999447169963351389859988880
Q gi|254780237|r 55 LRGAAITAVQIDGVLHEISSIKGVHEDLTDIILNIKGINLKMSGD--SHKRVTIFKRGPGVVTAGDIQTVNDIEVLNPDH 132 (340)
Q Consensus 55 i~G~ait~vkI~gv~HEfs~i~GV~EDV~eIiLNLK~I~~k~~~~--~~~~~~l~~~Gp~~vtA~Di~~p~~veivNpd~ 132 (340)
++|+|||+|||+|+.|||++||||+|||++|+||||+|+|+.+.+ ++.+++++++||++|||+||++|++++|+||||
T Consensus 1 l~G~AIt~vkI~Gv~hEf~~i~GV~EDv~eIilNLK~i~~~~~~~~~~~~~~~l~~~Gp~~vtA~di~~p~~ieivNp~~ 80 (125)
T 2a6h_A 1 IPGTAVTSVYIEDVLHEFSTIPGVKEDVVEIILNLKELVVRFLNPSLQTVTLLLKAEGPKEVKARDFLPVADVEIMNPDL 80 (125)
T ss_dssp CEEEEEEEEEESSCCSTTCBCTTBSSBHHHHHHHHHTCCEEECSTTCSBCCEEEEEESSCEEEGGGSCCCTTEEESCTTC
T ss_pred CCCEEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHCEEEEECCCCCCEEEEEEECCCCEEEEECCCCCCCCEEEECCCE
T ss_conf 98538999999994343020898521699999853051899615886249999943898279802356888589976988
Q ss_pred EEEEECCCCEEEEEEEEECCCCCEECCCCCCCCCCCCEECCCCCHH
Q ss_conf 8999778964999999746876320344446557543021243111
Q gi|254780237|r 133 VICNLDVDAVVRMELTVSKGHGYVPAKHHRTENDPIGLITIDALYS 178 (340)
Q Consensus 133 ~IaTl~~~~~l~iel~ie~G~GY~~~e~~~~~~~~ig~i~iDa~Fs 178 (340)
|||||++++.|+|+++|++||||+++++++.. .++|+|++||+||
T Consensus 81 ~Iatl~~~~~l~~el~i~~GrGYv~a~~~~~~-~~~g~i~iDa~fS 125 (125)
T 2a6h_A 81 HIATLEEGGRLNMEVRVDRGVGYVPAEKHGIK-DRINAIPVDAVFS 125 (125)
T ss_dssp EEEEBCSSCEEEEEEEEEEEESEECHHHHCCC-SSTTCEECCEECC
T ss_pred EEEEECCCCEEEEEEEEECCEEEEEECCCCCC-CCCCCCCCCCCCH
T ss_conf 89995568628899997058012220103674-5577654464430