HHsearch alignment of GI: 254780237 and MMDB domain: 2a6h_A_48-172

>2a6h_A (A:48-172) DNA-directed RNA polymerase alpha chain; RNA polymerase holoenzyme, streptolydigin, antibiotic, transcription regulation; HET: STD; 2.40A {Thermus thermophilus}
Probab=100.00  E-value=4.7e-42  Score=292.11  Aligned_cols=123  Identities=40%  Similarity=0.673  Sum_probs=117.1

Q ss_pred             CCCEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHCCCEEEECCC--CCEEEEEEEECCEEEEEEEEECCCCEEEECCCE
Q ss_conf             983068899988714431466462444999998401141777279--827999999447169963351389859988880
Q gi|254780237|r   55 LRGAAITAVQIDGVLHEISSIKGVHEDLTDIILNIKGINLKMSGD--SHKRVTIFKRGPGVVTAGDIQTVNDIEVLNPDH  132 (340)
Q Consensus        55 i~G~ait~vkI~gv~HEfs~i~GV~EDV~eIiLNLK~I~~k~~~~--~~~~~~l~~~Gp~~vtA~Di~~p~~veivNpd~  132 (340)
                      ++|+|||+|||+|+.|||++||||+|||++|+||||+|+|+.+.+  ++.+++++++||++|||+||++|++++|+||||
T Consensus         1 l~G~AIt~vkI~Gv~hEf~~i~GV~EDv~eIilNLK~i~~~~~~~~~~~~~~~l~~~Gp~~vtA~di~~p~~ieivNp~~   80 (125)
T 2a6h_A            1 IPGTAVTSVYIEDVLHEFSTIPGVKEDVVEIILNLKELVVRFLNPSLQTVTLLLKAEGPKEVKARDFLPVADVEIMNPDL   80 (125)
T ss_dssp             CEEEEEEEEEESSCCSTTCBCTTBSSBHHHHHHHHHTCCEEECSTTCSBCCEEEEEESSCEEEGGGSCCCTTEEESCTTC
T ss_pred             CCCEEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHCEEEEECCCCCCEEEEEEECCCCEEEEECCCCCCCCEEEECCCE
T ss_conf             98538999999994343020898521699999853051899615886249999943898279802356888589976988


Q ss_pred             EEEEECCCCEEEEEEEEECCCCCEECCCCCCCCCCCCEECCCCCHH
Q ss_conf             8999778964999999746876320344446557543021243111
Q gi|254780237|r  133 VICNLDVDAVVRMELTVSKGHGYVPAKHHRTENDPIGLITIDALYS  178 (340)
Q Consensus       133 ~IaTl~~~~~l~iel~ie~G~GY~~~e~~~~~~~~ig~i~iDa~Fs  178 (340)
                      |||||++++.|+|+++|++||||+++++++.. .++|+|++||+||
T Consensus        81 ~Iatl~~~~~l~~el~i~~GrGYv~a~~~~~~-~~~g~i~iDa~fS  125 (125)
T 2a6h_A           81 HIATLEEGGRLNMEVRVDRGVGYVPAEKHGIK-DRINAIPVDAVFS  125 (125)
T ss_dssp             EEEEBCSSCEEEEEEEEEEEESEECHHHHCCC-SSTTCEECCEECC
T ss_pred             EEEEECCCCEEEEEEEEECCEEEEEECCCCCC-CCCCCCCCCCCCH
T ss_conf             89995568628899997058012220103674-5577654464430