HHsearch alignment of GI: 254780237 and MMDB domain: 2pa8_D_36-153
>2pa8_D (D:36-153) DNA-directed RNA polymerase subunit D; ferredoxin-like Fe-S binding motif, platform for RNA polymerase assembly, transferase; 1.76A {Sulfolobus solfataricus P2} PDB: 2pmz_D 3hkz_D 2waq_D 2wb1_D
Probab=96.62 E-value=0.0052 Score=39.31 Aligned_cols=55 Identities=18% Similarity=0.291 Sum_probs=50.6
Q ss_pred CCEEEEEEEECCE---EEEEEEEEC-CCCEEEECCCEEEEEECCCCEEEEEEEEECCCC
Q ss_conf 8279999994471---699633513-898599888808999778964999999746876
Q gi|254780237|r 100 SHKRVTIFKRGPG---VVTAGDIQT-VNDIEVLNPDHVICNLDVDAVVRMELTVSKGHG 154 (340)
Q Consensus 100 ~~~~~~l~~~Gp~---~vtA~Di~~-p~~veivNpd~~IaTl~~~~~l~iel~ie~G~G 154 (340)
.....+|++++|. .|+++|+++ ++.+.-++++-.|+.|..+-.++++....+|.|
T Consensus 57 c~v~~~L~v~~~~~~~~VyS~dL~~~~~~v~pv~~~I~I~KL~~gQ~i~l~~~a~kGiG 115 (118)
T 2pa8_D 57 CYTKIYIEAEAPNEPRMIYSKDIKSEDPSVVPISGDIPIVLLGTNQKISLEARLRLGYG 115 (118)
T ss_dssp TEEEEEEEEECCSSCEEEEGGGCEESSTTCCBSCSCCEEEEECTTCEEEEEEEEEEECT
T ss_pred EEEEEEEEEECCCCCCEEEHHHCCCCCCCCCCCCCCEEEEEECCCCEEEEEEEEEECCC
T ss_conf 48999999884899847984452036997312148806999179956999999995820