HHsearch alignment of GI: 254780237 and MMDB domain: 2pa8_L_
>2pa8_L (L:) DNA-directed RNA polymerase subunit L; ferredoxin-like Fe-S binding motif, platform for RNA polymerase assembly, transferase; 1.76A {Sulfolobus solfataricus P2} PDB: 2pmz_L 3hkz_L 2waq_L 2wb1_L
Probab=94.75 E-value=0.1 Score=30.99 Aligned_cols=48 Identities=29% Similarity=0.317 Sum_probs=39.0
Q ss_pred EEEEEEEEEEECCCCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 442235776411688776218999999389617779999999999998887622
Q gi|254780237|r 180 IKKVSYTVESAREGQVLDYDKLSMTIDTDGSITGEDSVALASRILQDQLGMFIN 233 (340)
Q Consensus 180 V~~Vny~Ve~~rvg~~t~~dkL~lEI~TnGsi~P~eAl~~Aa~iL~~~l~~f~~ 233 (340)
|.-+.|.|.. .-.++..|-|.|+|+++|.+||..|++-|.+.+..|.+
T Consensus 38 V~fagY~ipH------Pl~~~~~i~Iqt~~~~~p~~~l~~a~~~l~~~~~~l~~ 85 (92)
T 2pa8_L 38 VSFASYYQPH------PLSDKIIVKILTDGSITPKDALLKAIENIRGMTSHYID 85 (92)
T ss_dssp EEEEEEECSS------TTSCCEEEEEEECSSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEEECCC------CCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 0698887777------88780599999689999899999999999999999999