HHsearch alignment of GI: 254780237 and MMDB domain: 2pa8_L_

>2pa8_L (L:) DNA-directed RNA polymerase subunit L; ferredoxin-like Fe-S binding motif, platform for RNA polymerase assembly, transferase; 1.76A {Sulfolobus solfataricus P2} PDB: 2pmz_L 3hkz_L 2waq_L 2wb1_L

Probab=93.71  E-value=0.092  Score=31.24  Aligned_cols=41  Identities=24%  Similarity=0.267  Sum_probs=32.2

Q ss_pred             CCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEEEEE
Q ss_conf             3678881589999616975667888999998741698306889998
Q gi|254780237|r   20 LGQEEENRTLMIAEPLPRGFAHTLGNALRRVLMSSLRGAAITAVQI   65 (340)
Q Consensus        20 ~~~~~~~~g~f~~~Ple~G~g~TlGNaLRRvLLssi~G~ait~vkI   65 (340)
                      +.+.+++++.|.+    .|..|||||+||-.|+.. |++-..+-+|
T Consensus         5 i~~~~~n~~~~~i----~~EdHTlgN~Lr~~L~~~-~~V~fagY~i   45 (92)
T 2pa8_L            5 ILKSESNYLELEI----EGEDHTLGNLIAGTLRRI-SGVSFASYYQ   45 (92)
T ss_dssp             EEEEETTEEEEEE----ETCCHHHHHHHHHHHHTS-TTEEEEEEEC
T ss_pred             EEECCCCEEEEEE----ECCCCHHHHHHHHHHHCC-CCEEEEEEEC
T ss_conf             9607997899999----289944999999998359-9806988877