HHsearch alignment of GI: 254780237 and MMDB domain: 3h0g_K_

>3h0g_K (K:) DNA-directed RNA polymerase II subunit RPB11; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=92.76  E-value=0.14  Score=30.11  Aligned_cols=44  Identities=20%  Similarity=0.289  Sum_probs=32.7

Q ss_pred             HHHCCCC--CCCEEEECCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHCC
Q ss_conf             5751797--420158636788815899996169756678889999987416
Q gi|254780237|r    6 WQELIKP--NNIEYIVLGQEEENRTLMIAEPLPRGFAHTLGNALRRVLMSS   54 (340)
Q Consensus         6 ~~~~~~P--~~i~~~~~~~~~~~~g~f~~~Ple~G~g~TlGNaLRRvLLss   54 (340)
                      ...|..|  .++++.. .+.+++.+.|.+    .|..|||||+||-.||..
T Consensus         7 ~e~~~l~~~~km~i~~-~~~~~n~~~~~i----~~EDHTLgNlLr~~Ll~~   52 (123)
T 3h0g_K            7 YELIELMGLPKVTYEL-DSKSPNAAVVTL----EKEDHTLANMLANQLLSD   52 (123)
T ss_dssp             GGTSSCSSCCSCCEEE-CSSSTTEEEEEE----ESCCSSHHHHHHHTGGGS
T ss_pred             CCEECCCCCCEEEEEE-CCCCCCEEEEEE----ECCCCHHHHHHHHHHHCC
T ss_conf             1131148986079873-477884699999----489856999999999549