HHsearch results for GI: 254780237 and protein with PDBid: 1z3e_B
>1z3e_B DNA-directed RNA polymerase alpha chain; bacterial transcription regulation, disulfide stress; 1.50A {Bacillus subtilis} SCOP: a.60.3.1 PDB: 3ihq_B
Probab=99.85 E-value=1.2e-21 Score=158.95 Aligned_cols=70 Identities=43% Similarity=0.616 Sum_probs=67.6
Q ss_pred HHHHHHHCCHHHCCCCHHHHHHHHHCCCCCHHHHHHCCHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 1123331112210110588898988398371888744988886188988644999999999808312676
Q gi|254780237|r 251 PFNPALLKKVEELELSVRSTNCLRGENIVYMGDLIQRTEADMLRMANFGRKSLVEIKGVLGTMGLFLGMN 320 (340)
Q Consensus 251 ~~~~~L~~~IeeLeLSvRs~NcLk~a~I~tigdLv~~s~~dLl~ikNfG~KSl~EI~~~L~~~gl~lg~~ 320 (340)
+.++.|+++|++|+||+|++|||+++||+|||||+++|++||+++||||+||++||+++|+++||+|||+
T Consensus 2 e~~~~L~~~I~~L~LS~R~~N~L~~~~I~tv~dL~~~s~~dLl~i~n~G~kSl~EI~~~L~~~gl~l~~~ 71 (73)
T 1z3e_B 2 EKEKVLEMTIEELDLSVRSYNCLKRAGINTVQELANKTEEDMMKVRNLGRKSLEEVKAKLEELGLGLRKD 71 (73)
T ss_dssp -CHHHHTCBGGGSCCBHHHHHHHHHTTCCBHHHHHTSCHHHHHTSTTCCHHHHHHHHHHHHHTTCCCC--
T ss_pred CHHHHHCCCHHHHCCCHHHHHHHHHCCCCCHHHHHHCCHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCC
T ss_conf 5067626889884698999999989489679999868999997478986605999999999849987999