>2a6h_A DNA-directed RNA polymerase alpha chain; RNA polymerase holoenzyme, streptolydigin, antibiotic, transcription regulation; HET: STD; 2.40A {Thermus thermophilus} SCOP: d.74.3.1 d.181.1.1 PDB: 1smy_A* 1zyr_A* 1iw7_A* 2a69_A* 2a6e_A 2a68_A* 2be5_A* 2cw0_A 2o5i_A 2o5j_A* 2ppb_A* 3dxj_A* 3eql_A* 1i6v_A* 1ynj_A* 1l9z_A 1l9u_A* 1ynn_A* 2gho_A 1hqm_A ...

Probab=100.00 E-value=0 Score=755.37 Aligned_cols=298 Identities=37% Similarity=0.567 Sum_probs=276.2 Q ss_pred CCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHCCCEEEECCC Q ss_conf 36788815899996169756678889999987416983068899988714431466462444999998401141777279 Q gi|254780237|r 20 LGQEEENRTLMIAEPLPRGFAHTLGNALRRVLMSSLRGAAITAVQIDGVLHEISSIKGVHEDLTDIILNIKGINLKMSGD 99 (340) Q Consensus 20 ~~~~~~~~g~f~~~Ple~G~g~TlGNaLRRvLLssi~G~ait~vkI~gv~HEfs~i~GV~EDV~eIiLNLK~I~~k~~~~ 99 (340) .++.+++||||+++||+||||+|+||||||+||||++|+|||+|||+||.|||++||||+|||+||+||||+|+|++.++ T Consensus 13 ~~~~~~~Yg~F~i~Pl~~G~g~TlGnaLRRvLLssi~G~ait~vkI~gv~HEfs~i~GV~Edv~eIllNLK~i~~k~~~~ 92 (315) T 2a6h_A 13 VRTQGREYGEFVLEPLERGFGVTLGNPLRRILLSSIPGTAVTSVYIEDVLHEFSTIPGVKEDVVEIILNLKELVVRFLNP 92 (315) T ss_dssp EEEETTTEEEEEEEEECTTCHHHHHHHHHHHHHHTCEEEEEEEEEESSCCSTTCBCTTBSSBHHHHHHHHHTCCEEECST T ss_pred EEECCCCEEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHCCCEEEEECC T ss_conf 88668856899996688972304678999999856985489999999954423458885105899998530446997148 Q ss_pred --CCEEEEEEEECCEEEEEEEEECCCCEEEECCCEEEEEECCCCEEEEEEEEECCCCCEECCCCCCCCCCCCEECCCCCH Q ss_conf --827999999447169963351389859988880899977896499999974687632034444655754302124311 Q gi|254780237|r 100 --SHKRVTIFKRGPGVVTAGDIQTVNDIEVLNPDHVICNLDVDAVVRMELTVSKGHGYVPAKHHRTENDPIGLITIDALY 177 (340) Q Consensus 100 --~~~~~~l~~~Gp~~vtA~Di~~p~~veivNpd~~IaTl~~~~~l~iel~ie~G~GY~~~e~~~~~~~~ig~i~iDa~F 177 (340) ++..++++++||++|||+||++|++++|+||||||||+++++.|+||++|++||||++++.++.. .++|+|++||+| T Consensus 93 ~~~~~~~~l~~~Gp~~vtA~di~~p~~ieivNpdq~IaTl~~~~~l~~el~i~~G~Gy~~~e~~~~~-~~~g~i~iDa~F 171 (315) T 2a6h_A 93 SLQTVTLLLKAEGPKEVKARDFLPVADVEIMNPDLHIATLEEGGRLNMEVRVDRGVGYVPAEKHGIK-DRINAIPVDAVF 171 (315) T ss_dssp TCSBCCEEEEEESSCEEEGGGSCCCTTEEESCTTCEEEEBCSSCEEEEEEEEEEEESEECHHHHCCC-SSTTCEECCEEC T ss_pred CCCEEEEEEECCCCEEEEEECCCCCCCEEEECCCEEEEEECCCCEEEEEEEEEECCCEEECCCCCCC-CCCCCCCCCCCC T ss_conf 8615999996499848995414689858997898799997789669999999925754402335664-656751677652 Q ss_pred HEEEEEEEEEEEECCCCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHH--CCCCHHHHH Q ss_conf 114422357764116887762189999993896177799999999999988876224444322100000--000011233 Q gi|254780237|r 178 SPIKKVSYTVESAREGQVLDYDKLSMTIDTDGSITGEDSVALASRILQDQLGMFINFEEPKKEVKEDIN--VKSLPFNPA 255 (340) Q Consensus 178 sPV~~Vny~Ve~~rvg~~t~~dkL~lEI~TnGsi~P~eAl~~Aa~iL~~~l~~f~~~~~~~~~~~~~~~--~~~~~~~~~ 255 (340) |||+||||.|+++|+||+++||+|+|||||||||+|++||++||+||++||.+|.++++.......... ......+.. T Consensus 172 sPV~kVny~V~~~rvg~~~~~ekL~lEIwTnGsi~P~~Al~~Aa~iL~~~f~~f~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (315) T 2a6h_A 172 SPVRRVAFQVEDTRLGQRTDLDKLTLRIWTDGSVTPLEALNQAVEILREHLTYFSNPQAAAVAAPEEAKEPEAPPEQEEE 251 (315) T ss_dssp CCEEEEEEEEEECCBTTBCCCEEEEEEEEECSSSCHHHHHHHHHHHHHHHHHTTCSCC---------------------- T ss_pred CCEEEEEEEEEECCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHH T ss_conf 35257899999711367777654699998289899899999999999999997528310022333323342222200354 Q ss_pred HHCCHHHCCCCHHHHHHHHHCCCCCHHHHHHCCHHHHHCCCCCCHHHHHHHHHHHHHHCCCCC Q ss_conf 311122101105888989883983718887449888861889886449999999998083126 Q gi|254780237|r 256 LLKKVEELELSVRSTNCLRGENIVYMGDLIQRTEADMLRMANFGRKSLVEIKGVLGTMGLFLG 318 (340) Q Consensus 256 L~~~IeeLeLSvRs~NcLk~a~I~tigdLv~~s~~dLl~ikNfG~KSl~EI~~~L~~~gl~lg 318 (340) ++++|++|+||+|++||||+|||+|||||+++|++||+++||||+||++||+++|+++||+|. T Consensus 252 l~~~Ie~L~LSvRs~NcLk~a~I~ti~dLv~~s~~eLl~i~N~G~KSl~EI~ekL~~~Gl~L~ 314 (315) T 2a6h_A 252 LDLPLEELGLSTRVLHSLKEEGIESVRALLALNLKDLKNIPGIGERSLEEIKEALEKKGFTLK 314 (315) T ss_dssp --------------------------------------------------------------- T ss_pred HCCCHHHHCCCHHHHHHHHHCCCCCHHHHHHCCHHHHHCCCCCCCCCHHHHHHHHHHCCCCCC T ss_conf 368099822879888678785994899987399999847999851039999999998599889

HHsearch results for GI: 254780237 and protein with PDBid: 2a6h_A