HHsearch results for GI: 254780237 and protein with PDBid: 3lu0_A
>3lu0_A DNA-directed RNA polymerase subunit alpha; E. coli RNA polymerase, nucleotidyltransferase, transcription, transferase; 11.20A {Escherichia coli} PDB: 3iyd_A
Probab=100.00 E-value=0 Score=810.30 Aligned_cols=324 Identities=45% Similarity=0.798 Sum_probs=304.0
Q ss_pred CCCHHHHCCCCCCCEEEECCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCCCCCCHHH
Q ss_conf 52205751797420158636788815899996169756678889999987416983068899988714431466462444
Q gi|254780237|r 2 IQKNWQELIKPNNIEYIVLGQEEENRTLMIAEPLPRGFAHTLGNALRRVLMSSLRGAAITAVQIDGVLHEISSIKGVHED 81 (340)
Q Consensus 2 ~~~~~~~~~~P~~i~~~~~~~~~~~~g~f~~~Ple~G~g~TlGNaLRRvLLssi~G~ait~vkI~gv~HEfs~i~GV~ED 81 (340)
|+..|++|++|+.+++ ++.+++||||+++||+||||+|||||||||||||++|+|||+|||+||.|||++|+||+||
T Consensus 1 m~~~~~~~~~p~~i~~---~~~~~~yg~f~i~Ple~G~g~TlGnaLRRvLLssi~G~ait~vkI~gv~HEfsti~GV~Ed 77 (329)
T 3lu0_A 1 MQGSVTEFLKPRLVDI---EQVSSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEIDGVLHEYSTKEGVQED 77 (329)
T ss_dssp CCCSTTTSSSCCCCCE---EECTTSEEEEEECCCCTTCHHHHHHHHHHHTTTSSCEEEEEEEEESSCSSTTCCCTTBSSC
T ss_pred CCCHHHHHCCCCEEEE---ECCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCCCCCC
T ss_conf 9613666138857787---2268867899997688862636688999998856984588999989965545568996237
Q ss_pred HHHHHHHHCCCEEEECCCCCEEEEEEEECCEEEEEEEEECCCCEEEECCCEEEEEEC-CCCEEEEEEEEECCCCCEECCC
Q ss_conf 999998401141777279827999999447169963351389859988880899977-8964999999746876320344
Q gi|254780237|r 82 LTDIILNIKGINLKMSGDSHKRVTIFKRGPGVVTAGDIQTVNDIEVLNPDHVICNLD-VDAVVRMELTVSKGHGYVPAKH 160 (340)
Q Consensus 82 V~eIiLNLK~I~~k~~~~~~~~~~l~~~Gp~~vtA~Di~~p~~veivNpd~~IaTl~-~~~~l~iel~ie~G~GY~~~e~ 160 (340)
|++|+||||+|+|+.+++.+..++|+++|||+|||+||++|++++|+||||||||++ +++.|+|+++|++|+||++++.
T Consensus 78 v~~IilNLK~i~~~~~~~~~~~~~l~~~Gpg~vtA~di~~p~~veivNpdq~IaTl~~~~~~l~~e~~i~~G~GY~~~~~ 157 (329)
T 3lu0_A 78 ILEILLNLKGLAVRVQGKDEVILTLNKSGIGPVTAADITHDGDVEIVKPQHVICHLTDENASISMRIKVQRGRGYVPAST 157 (329)
T ss_dssp HHHHHHHHHSCCCEESSCSCEEEEECCCSSSCEETTSSCCCSSEECSCTTCEEECBCSSCCCCCEEEEEEEESSEECTTT
T ss_pred HHHHHHHCCCCCEEECCCCCEEEEEEEECCCCEEECCCCCCCCEEEECCCEEEEEECCCCCEEEEEEEEEECCCEEECCC
T ss_conf 99999846733156426872589999616776681136667987995899889996588926999999990565264200
Q ss_pred CC---CCCCCCCEECCCCCHHEEEEEEEEEEEECCCCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 44---655754302124311114422357764116887762189999993896177799999999999988876224444
Q gi|254780237|r 161 HR---TENDPIGLITIDALYSPIKKVSYTVESAREGQVLDYDKLSMTIDTDGSITGEDSVALASRILQDQLGMFINFEEP 237 (340)
Q Consensus 161 ~~---~~~~~ig~i~iDa~FsPV~~Vny~Ve~~rvg~~t~~dkL~lEI~TnGsi~P~eAl~~Aa~iL~~~l~~f~~~~~~ 237 (340)
++ ....++|+||+||+||||+||||.|+++|+|++++||+|+|||||||||+|++||++||++|++||++|.++++.
T Consensus 158 ~~~~~~~~~~ig~i~iDa~FsPV~kVny~Ve~~rv~~~~~~e~L~lEI~TnGsI~P~eAl~~AakiL~~~f~~f~~~~~~ 237 (329)
T 3lu0_A 158 RIHSEEDERPIGRLLVDACYSPVERIAYNVEAARVEQRTDLDKLVIEMETNGTIDPEEAIRRAATILAEQLEAFVDLRDV 237 (329)
T ss_dssp SCCCSTTSSSCCCEECCEECCCEEEEEEEEEEECCSSCSCEEEEEEEEEECSSSCHHHHHHHHHHHHHHHTTTSSSCC--
T ss_pred CCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEECCCCCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 23554334667834036655563789999864355667751038999983898898999999999999999976263101
Q ss_pred CCCCCCHHHCCCCHHHHHHHCCHHHCCCCHHHHHHHHHCCCCCHHHHHHCCHHHHHCCCCCCHHHHHHHHHHHHHHCCCC
Q ss_conf 32210000000001123331112210110588898988398371888744988886188988644999999999808312
Q gi|254780237|r 238 KKEVKEDINVKSLPFNPALLKKVEELELSVRSTNCLRGENIVYMGDLIQRTEADMLRMANFGRKSLVEIKGVLGTMGLFL 317 (340)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~L~~~IeeLeLSvRs~NcLk~a~I~tigdLv~~s~~dLl~ikNfG~KSl~EI~~~L~~~gl~l 317 (340)
..... ..+..+.++.+.++||+||||+||+||||||||+|||||+++|++||+++||||+||++||+++|+++||+|
T Consensus 238 ~~~~~---~~~~~~~~~~l~~~Ie~LeLSvRs~NcLkra~I~ti~dLv~~s~~dLl~ikNfGkKSl~EI~~kL~~~gl~l 314 (329)
T 3lu0_A 238 RQPEV---KEEKPEFDPILLRPVDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLKTPNLGKKSLTEIKDVLASRGLSL 314 (329)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCCC---CCCCCCCCHHHHCCHHHHCCCHHHHHHHHHCCCCCHHHHHHCCHHHHHCCCCCCCCCHHHHHHHHHHCCCCC
T ss_conf 34444---444444265763879885277888865757189189997647999995589976200999999999749777
Q ss_pred CCCCCCCCHHHHHH
Q ss_conf 67687898677999
Q gi|254780237|r 318 GMNLPDWPPESIEE 331 (340)
Q Consensus 318 g~~l~~~~~~~~~~ 331 (340)
||++++|||+++++
T Consensus 315 gm~l~~~~~~~~~~ 328 (329)
T 3lu0_A 315 GMRLENWPPASIAD 328 (329)
T ss_dssp --------------
T ss_pred CCCCCCCCCCCCCC
T ss_conf 78789999534356